Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_60

Experiment: N2E2wt with N1B4m denitrifying repB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_58 and Pf1N1B4_59 are separated by 244 nucleotidesPf1N1B4_59 and Pf1N1B4_60 overlap by 1 nucleotidesPf1N1B4_60 and Pf1N1B4_61 are separated by 276 nucleotidesPf1N1B4_61 and Pf1N1B4_62 are separated by 71 nucleotides Pf1N1B4_58 - Transaldolase (EC 2.2.1.2), at 62,365 to 63,291 _58 Pf1N1B4_59 - Serine-protein kinase RsbW (EC 2.7.11.1), at 63,536 to 64,018 _59 Pf1N1B4_60 - Serine phosphatase RsbU, regulator of sigma subunit, at 64,018 to 65,199 _60 Pf1N1B4_61 - FIG00953170: hypothetical protein, at 65,476 to 65,775 _61 Pf1N1B4_62 - VacJ-like lipoprotein precursor, at 65,847 to 66,536 _62 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 63.294 kb on + strandat 63.367 kb on + strandat 63.367 kb on + strandat 63.440 kb on + strandat 63.440 kb on + strandat 63.441 kb on - strandat 63.445 kb on + strandat 63.445 kb on + strandat 65.279 kb on - strandat 65.315 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.325 kb on - strandat 65.344 kb on - strandat 65.344 kb on - strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.434 kb on + strandat 65.434 kb on + strandat 65.434 kb on + strandat 65.497 kb on + strandat 65.498 kb on - strandat 65.754 kb on + strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.773 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N2E2wt with N1B4m denitrifying repB
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63,294 + -3.6
63,367 + -1.1
63,367 + +0.1
63,440 + +0.7
63,440 + -2.5
63,441 - -1.3
63,445 + -0.9
63,445 + -0.1
65,279 - +0.7
65,315 - -0.2
65,319 - +1.7
65,319 - -0.5
65,319 - -0.1
65,319 - +0.0
65,319 - +0.7
65,319 - +0.7
65,319 - +0.7
65,319 - +0.5
65,325 - -0.5
65,344 - +0.7
65,344 - -0.6
65,410 + -0.9
65,410 + +0.0
65,410 + +0.5
65,410 + -1.6
65,410 + -0.2
65,410 + -2.5
65,410 + -0.7
65,410 + +0.3
65,410 + -0.4
65,410 + +0.7
65,410 + +0.7
65,410 + -3.1
65,434 + -3.3
65,434 + +0.7
65,434 + -0.5
65,497 + -2.1
65,498 - +0.7
65,754 + +0.7
65,755 - +0.7
65,755 - +2.3
65,755 - -0.1
65,755 - -3.2
65,755 - -1.9
65,773 + -3.0

Or see this region's nucleotide sequence