Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5527

Experiment: N2E2wt with N1B4m denitrifying repB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5527 and Pf1N1B4_5528 are separated by 300 nucleotides Pf1N1B4_5527 - hypothetical protein, at 286,751 to 287,182 _5527 Pf1N1B4_5528 - hypothetical protein, at 287,483 to 287,701 _5528 Position (kb) 286 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.752 kb on + strandat 285.752 kb on + strandat 285.752 kb on + strandat 285.752 kb on + strandat 285.752 kb on + strandat 285.752 kb on + strandat 285.752 kb on + strandat 285.785 kb on + strandat 285.785 kb on + strandat 285.785 kb on + strandat 285.785 kb on + strandat 285.786 kb on - strandat 285.789 kb on + strandat 285.789 kb on + strandat 285.789 kb on + strandat 285.789 kb on + strandat 285.789 kb on + strandat 285.790 kb on - strandat 285.790 kb on - strandat 285.790 kb on - strandat 285.879 kb on + strandat 285.879 kb on + strandat 285.879 kb on + strandat 285.880 kb on - strandat 285.927 kb on + strandat 285.962 kb on + strandat 285.963 kb on - strandat 285.963 kb on - strandat 285.963 kb on - strandat 286.035 kb on - strandat 286.137 kb on + strandat 286.137 kb on + strandat 286.137 kb on + strandat 286.138 kb on - strandat 286.160 kb on - strandat 286.160 kb on - strandat 286.160 kb on - strandat 286.173 kb on + strandat 286.173 kb on + strandat 286.174 kb on - strandat 286.217 kb on + strandat 286.255 kb on + strandat 286.255 kb on + strandat 286.255 kb on + strandat 286.256 kb on - strandat 286.318 kb on + strandat 286.318 kb on + strandat 286.318 kb on + strandat 286.326 kb on + strandat 286.326 kb on + strandat 286.326 kb on + strandat 286.326 kb on + strandat 286.327 kb on - strandat 286.327 kb on - strandat 286.330 kb on + strandat 286.363 kb on + strandat 286.364 kb on - strandat 286.389 kb on + strandat 286.389 kb on + strandat 286.389 kb on + strandat 286.389 kb on + strandat 286.389 kb on + strandat 286.390 kb on - strandat 286.390 kb on - strandat 286.390 kb on - strandat 286.390 kb on - strandat 286.390 kb on - strandat 286.390 kb on - strandat 286.390 kb on - strandat 286.390 kb on - strandat 286.421 kb on + strandat 286.421 kb on + strandat 286.435 kb on + strandat 286.435 kb on + strandat 286.435 kb on + strandat 286.435 kb on + strandat 286.435 kb on + strandat 286.435 kb on + strandat 286.436 kb on - strandat 286.436 kb on - strandat 286.436 kb on - strandat 286.439 kb on - strandat 286.439 kb on - strandat 286.439 kb on - strandat 286.464 kb on + strandat 286.546 kb on + strandat 286.547 kb on - strandat 286.598 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.640 kb on + strandat 286.641 kb on - strandat 286.641 kb on - strandat 286.641 kb on - strandat 286.641 kb on - strandat 286.641 kb on - strandat 286.643 kb on + strandat 286.643 kb on + strandat 286.643 kb on + strandat 286.644 kb on - strandat 286.644 kb on - strandat 286.644 kb on - strandat 286.649 kb on + strandat 286.649 kb on + strandat 286.649 kb on + strandat 286.650 kb on - strandat 286.650 kb on - strandat 286.650 kb on - strandat 286.650 kb on - strandat 286.662 kb on + strandat 286.662 kb on + strandat 286.662 kb on + strandat 286.662 kb on + strandat 286.663 kb on - strandat 286.663 kb on - strandat 286.667 kb on + strandat 286.667 kb on + strandat 286.667 kb on + strandat 286.668 kb on - strandat 286.668 kb on - strandat 286.750 kb on - strandat 286.753 kb on - strandat 286.753 kb on - strandat 286.774 kb on - strandat 286.774 kb on - strandat 286.774 kb on - strandat 286.801 kb on - strand, within Pf1N1B4_5527at 286.841 kb on - strand, within Pf1N1B4_5527at 286.841 kb on - strand, within Pf1N1B4_5527at 286.941 kb on + strand, within Pf1N1B4_5527at 286.941 kb on + strandat 286.941 kb on + strandat 286.942 kb on - strand, within Pf1N1B4_5527at 286.942 kb on - strand, within Pf1N1B4_5527at 286.942 kb on - strand, within Pf1N1B4_5527at 286.942 kb on - strand, within Pf1N1B4_5527at 286.942 kb on - strand, within Pf1N1B4_5527at 286.942 kb on - strandat 287.038 kb on - strand, within Pf1N1B4_5527at 287.091 kb on + strand, within Pf1N1B4_5527at 287.092 kb on - strand, within Pf1N1B4_5527at 287.192 kb on - strandat 287.284 kb on - strandat 287.317 kb on + strandat 287.402 kb on + strandat 287.403 kb on - strandat 287.423 kb on + strandat 287.423 kb on + strandat 287.424 kb on - strandat 287.462 kb on + strandat 287.463 kb on - strandat 287.463 kb on - strandat 287.702 kb on - strandat 287.702 kb on - strandat 287.702 kb on - strandat 287.702 kb on - strandat 287.702 kb on - strandat 287.702 kb on - strandat 287.771 kb on + strandat 287.772 kb on - strandat 287.808 kb on + strandat 287.808 kb on + strandat 287.808 kb on + strandat 287.808 kb on + strandat 287.809 kb on - strandat 287.809 kb on - strandat 287.809 kb on - strandat 287.905 kb on + strandat 287.906 kb on - strandat 287.906 kb on - strandat 287.947 kb on + strandat 287.947 kb on + strandat 287.947 kb on + strandat 287.948 kb on - strandat 287.984 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.030 kb on + strandat 288.031 kb on - strandat 288.031 kb on - strandat 288.031 kb on - strandat 288.031 kb on - strandat 288.031 kb on - strandat 288.034 kb on + strandat 288.059 kb on + strandat 288.060 kb on - strandat 288.060 kb on - strandat 288.060 kb on - strandat 288.060 kb on - strandat 288.060 kb on - strandat 288.105 kb on + strandat 288.140 kb on + strandat 288.140 kb on + strandat 288.140 kb on + strandat 288.140 kb on + strandat 288.140 kb on + strandat 288.141 kb on - strandat 288.141 kb on - strandat 288.141 kb on - strandat 288.141 kb on - strandat 288.141 kb on - strandat 288.143 kb on + strandat 288.143 kb on + strandat 288.144 kb on - strandat 288.144 kb on - strandat 288.144 kb on - strandat 288.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N2E2wt with N1B4m denitrifying repB
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285,752 + +0.8
285,752 + +0.8
285,752 + -2.1
285,752 + +0.8
285,752 + -0.0
285,752 + +0.8
285,752 + +0.0
285,785 + +0.8
285,785 + -0.8
285,785 + -1.0
285,785 + +0.8
285,786 - -2.4
285,789 + -0.7
285,789 + -1.5
285,789 + -2.2
285,789 + -1.4
285,789 + -2.9
285,790 - -2.5
285,790 - +0.8
285,790 - -2.6
285,879 + +0.1
285,879 + -1.1
285,879 + -1.2
285,880 - +0.5
285,927 + -1.2
285,962 + +0.5
285,963 - -1.8
285,963 - -0.8
285,963 - +0.8
286,035 - -0.4
286,137 + -1.4
286,137 + -2.0
286,137 + -0.2
286,138 - -1.4
286,160 - -2.2
286,160 - -3.2
286,160 - +0.7
286,173 + -0.8
286,173 + -2.2
286,174 - -0.2
286,217 + +1.2
286,255 + +0.3
286,255 + -0.6
286,255 + -0.3
286,256 - -2.5
286,318 + -2.5
286,318 + +0.8
286,318 + -0.2
286,326 + +0.8
286,326 + -0.3
286,326 + +0.5
286,326 + -2.4
286,327 - -0.8
286,327 - +0.8
286,330 + +2.1
286,363 + -3.3
286,364 - -2.5
286,389 + -0.2
286,389 + +0.8
286,389 + +0.8
286,389 + -0.6
286,389 + +1.3
286,390 - +0.8
286,390 - +0.8
286,390 - -0.0
286,390 - -1.2
286,390 - -0.6
286,390 - +0.8
286,390 - -0.2
286,390 - +0.8
286,421 + -0.7
286,421 + -0.7
286,435 + +0.8
286,435 + +1.4
286,435 + -2.0
286,435 + +0.8
286,435 + +0.8
286,435 + -1.8
286,436 - +1.5
286,436 - +0.8
286,436 - -0.2
286,439 - -0.4
286,439 - +0.1
286,439 - -1.9
286,464 + -1.0
286,546 + -0.4
286,547 - -1.8
286,598 + -2.8
286,640 + -0.1
286,640 + +0.2
286,640 + -2.4
286,640 + -1.0
286,640 + +0.8
286,640 + +1.3
286,640 + -1.8
286,640 + +0.1
286,640 + +1.8
286,641 - +0.7
286,641 - -1.6
286,641 - -0.2
286,641 - +1.0
286,641 - -1.5
286,643 + -0.8
286,643 + +0.8
286,643 + +0.4
286,644 - +0.8
286,644 - +0.8
286,644 - +0.8
286,649 + -1.2
286,649 + +0.3
286,649 + +0.7
286,650 - -0.9
286,650 - -0.2
286,650 - +0.8
286,650 - +0.8
286,662 + -0.2
286,662 + +0.1
286,662 + -0.4
286,662 + -3.4
286,663 - -0.8
286,663 - +2.1
286,667 + -0.6
286,667 + -0.2
286,667 + +0.8
286,668 - -0.1
286,668 - -1.8
286,750 - -0.4
286,753 - -0.2
286,753 - -2.4
286,774 - +0.2
286,774 - +0.8
286,774 - -1.2
286,801 - Pf1N1B4_5527 0.12 -2.2
286,841 - Pf1N1B4_5527 0.21 +0.8
286,841 - Pf1N1B4_5527 0.21 +0.8
286,941 + Pf1N1B4_5527 0.44 +0.6
286,941 + +0.8
286,941 + -1.8
286,942 - Pf1N1B4_5527 0.44 -2.0
286,942 - Pf1N1B4_5527 0.44 -0.4
286,942 - Pf1N1B4_5527 0.44 +0.8
286,942 - Pf1N1B4_5527 0.44 +1.0
286,942 - Pf1N1B4_5527 0.44 -1.8
286,942 - -0.8
287,038 - Pf1N1B4_5527 0.66 -0.8
287,091 + Pf1N1B4_5527 0.79 +0.8
287,092 - Pf1N1B4_5527 0.79 +0.0
287,192 - -0.8
287,284 - +0.6
287,317 + -0.9
287,402 + -0.9
287,403 - -0.8
287,423 + -1.4
287,423 + +0.1
287,424 - -1.2
287,462 + +0.6
287,463 - -2.4
287,463 - -0.0
287,702 - -3.0
287,702 - -1.9
287,702 - -0.5
287,702 - +1.2
287,702 - +0.8
287,702 - -2.2
287,771 + +0.8
287,772 - -0.8
287,808 + +0.8
287,808 + -1.0
287,808 + +0.6
287,808 + -0.7
287,809 - -0.9
287,809 - +0.3
287,809 - +0.8
287,905 + +0.8
287,906 - -1.8
287,906 - +0.8
287,947 + +0.8
287,947 + -2.5
287,947 + +1.0
287,948 - -2.1
287,984 + +0.8
288,030 + -1.0
288,030 + -3.3
288,030 + -0.7
288,030 + +0.8
288,030 + -0.6
288,030 + -0.1
288,030 + -1.2
288,030 + +0.8
288,030 + +1.7
288,030 + -0.2
288,031 - +0.0
288,031 - +0.8
288,031 - -0.2
288,031 - -3.0
288,031 - -0.9
288,034 + -0.4
288,059 + +1.1
288,060 - +0.8
288,060 - -1.2
288,060 - -1.8
288,060 - -2.6
288,060 - -3.5
288,105 + -1.2
288,140 + +0.8
288,140 + -0.7
288,140 + +0.7
288,140 + -0.7
288,140 + +0.8
288,141 - -1.4
288,141 - -0.1
288,141 - -2.4
288,141 - -0.5
288,141 - -2.6
288,143 + +0.8
288,143 + -0.0
288,144 - -0.0
288,144 - -1.0
288,144 - -0.7
288,144 - +0.8

Or see this region's nucleotide sequence