Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24510

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24495 and BWI76_RS24500 are separated by 9 nucleotidesBWI76_RS24500 and BWI76_RS24505 are separated by 9 nucleotidesBWI76_RS24505 and BWI76_RS24510 overlap by 8 nucleotidesBWI76_RS24510 and BWI76_RS24515 are separated by 9 nucleotidesBWI76_RS24515 and BWI76_RS24520 are separated by 0 nucleotides BWI76_RS24495: BWI76_RS24495 - urease accessory protein, at 5,108,180 to 5,109,004 _RS24495 BWI76_RS24500: BWI76_RS24500 - urease subunit gamma, at 5,109,014 to 5,109,316 _RS24500 BWI76_RS24505: BWI76_RS24505 - urease subunit beta, at 5,109,326 to 5,109,646 _RS24505 BWI76_RS24510: BWI76_RS24510 - urease subunit alpha, at 5,109,639 to 5,111,342 _RS24510 BWI76_RS24515: BWI76_RS24515 - urease accessory protein UreE, at 5,111,352 to 5,111,822 _RS24515 BWI76_RS24520: BWI76_RS24520 - urease accessory protein UreF, at 5,111,823 to 5,112,497 _RS24520 Position (kb) 5109 5110 5111 5112Strain fitness (log2 ratio) -2 -1 0 1at 5108.693 kb on + strand, within BWI76_RS24495at 5108.772 kb on - strand, within BWI76_RS24495at 5108.837 kb on - strand, within BWI76_RS24495at 5108.999 kb on + strandat 5109.225 kb on - strand, within BWI76_RS24500at 5109.246 kb on + strand, within BWI76_RS24500at 5109.264 kb on - strand, within BWI76_RS24500at 5109.279 kb on + strand, within BWI76_RS24500at 5109.365 kb on + strand, within BWI76_RS24505at 5109.613 kb on + strand, within BWI76_RS24505at 5110.422 kb on - strand, within BWI76_RS24510at 5110.539 kb on + strand, within BWI76_RS24510at 5110.552 kb on - strand, within BWI76_RS24510at 5110.572 kb on + strand, within BWI76_RS24510at 5110.631 kb on - strand, within BWI76_RS24510at 5110.837 kb on - strand, within BWI76_RS24510at 5110.841 kb on + strand, within BWI76_RS24510at 5110.883 kb on + strand, within BWI76_RS24510at 5111.026 kb on + strand, within BWI76_RS24510at 5111.049 kb on + strand, within BWI76_RS24510at 5111.100 kb on + strand, within BWI76_RS24510at 5111.154 kb on + strand, within BWI76_RS24510at 5111.162 kb on - strand, within BWI76_RS24510at 5111.265 kb on - strandat 5111.344 kb on - strandat 5111.401 kb on + strand, within BWI76_RS24515at 5111.401 kb on + strand, within BWI76_RS24515at 5111.409 kb on - strand, within BWI76_RS24515at 5111.577 kb on + strand, within BWI76_RS24515at 5111.604 kb on - strand, within BWI76_RS24515at 5111.617 kb on + strand, within BWI76_RS24515at 5111.617 kb on + strand, within BWI76_RS24515at 5111.794 kb on + strandat 5111.940 kb on - strand, within BWI76_RS24520at 5112.028 kb on - strand, within BWI76_RS24520at 5112.135 kb on + strand, within BWI76_RS24520at 5112.143 kb on - strand, within BWI76_RS24520

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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5,108,693 + BWI76_RS24495 0.62 -0.4
5,108,772 - BWI76_RS24495 0.72 -0.5
5,108,837 - BWI76_RS24495 0.80 -0.5
5,108,999 + +0.3
5,109,225 - BWI76_RS24500 0.70 -0.5
5,109,246 + BWI76_RS24500 0.77 +0.4
5,109,264 - BWI76_RS24500 0.83 +0.8
5,109,279 + BWI76_RS24500 0.87 -0.2
5,109,365 + BWI76_RS24505 0.12 +0.0
5,109,613 + BWI76_RS24505 0.89 +0.6
5,110,422 - BWI76_RS24510 0.46 -0.3
5,110,539 + BWI76_RS24510 0.53 +0.0
5,110,552 - BWI76_RS24510 0.54 -0.4
5,110,572 + BWI76_RS24510 0.55 -0.1
5,110,631 - BWI76_RS24510 0.58 +0.5
5,110,837 - BWI76_RS24510 0.70 -0.6
5,110,841 + BWI76_RS24510 0.71 +0.3
5,110,883 + BWI76_RS24510 0.73 +0.1
5,111,026 + BWI76_RS24510 0.81 +0.9
5,111,049 + BWI76_RS24510 0.83 -0.7
5,111,100 + BWI76_RS24510 0.86 -0.1
5,111,154 + BWI76_RS24510 0.89 -0.3
5,111,162 - BWI76_RS24510 0.89 -0.3
5,111,265 - -2.0
5,111,344 - -1.2
5,111,401 + BWI76_RS24515 0.10 -0.1
5,111,401 + BWI76_RS24515 0.10 -0.2
5,111,409 - BWI76_RS24515 0.12 +0.4
5,111,577 + BWI76_RS24515 0.48 -0.3
5,111,604 - BWI76_RS24515 0.54 -1.0
5,111,617 + BWI76_RS24515 0.56 +0.1
5,111,617 + BWI76_RS24515 0.56 +0.1
5,111,794 + -1.1
5,111,940 - BWI76_RS24520 0.17 -0.4
5,112,028 - BWI76_RS24520 0.30 -0.7
5,112,135 + BWI76_RS24520 0.46 +0.1
5,112,143 - BWI76_RS24520 0.47 -0.0

Or see this region's nucleotide sequence