Experiment: Thymidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22275 and BWI76_RS22280 are separated by 12 nucleotides BWI76_RS22280 and BWI76_RS22285 are separated by 134 nucleotides BWI76_RS22285 and BWI76_RS22290 are separated by 256 nucleotides
BWI76_RS22275: BWI76_RS22275 - carbamoyltransferase HypF, at 4,642,677 to 4,644,896
_RS22275
BWI76_RS22280: BWI76_RS22280 - formate dehydrogenase-H ferredoxin subunit, at 4,644,909 to 4,645,436
_RS22280
BWI76_RS22285: BWI76_RS22285 - transcriptional regulator, at 4,645,571 to 4,646,584
_RS22285
BWI76_RS22290: BWI76_RS22290 - PTS cellobiose/arbutin/salicin transporter subunit IIBC, at 4,646,841 to 4,648,283
_RS22290
Position (kb)
4645
4646
4647 Strain fitness (log2 ratio)
-1
0
1 at 4644.889 kb on - strand at 4644.923 kb on - strand at 4644.923 kb on - strand at 4644.961 kb on - strand at 4644.963 kb on + strand, within BWI76_RS22280 at 4645.001 kb on + strand, within BWI76_RS22280 at 4645.083 kb on - strand, within BWI76_RS22280 at 4645.202 kb on + strand, within BWI76_RS22280 at 4645.225 kb on + strand, within BWI76_RS22280 at 4645.379 kb on + strand, within BWI76_RS22280 at 4645.409 kb on - strand at 4645.770 kb on + strand, within BWI76_RS22285 at 4645.778 kb on - strand, within BWI76_RS22285 at 4645.778 kb on - strand, within BWI76_RS22285 at 4645.789 kb on + strand, within BWI76_RS22285 at 4646.340 kb on + strand, within BWI76_RS22285 at 4646.350 kb on - strand, within BWI76_RS22285 at 4646.357 kb on + strand, within BWI76_RS22285 at 4646.448 kb on - strand, within BWI76_RS22285 at 4646.573 kb on - strand at 4646.665 kb on + strand at 4646.919 kb on - strand at 4646.993 kb on - strand, within BWI76_RS22290 at 4647.091 kb on - strand, within BWI76_RS22290 at 4647.443 kb on + strand, within BWI76_RS22290 at 4647.506 kb on - strand, within BWI76_RS22290 at 4647.515 kb on + strand, within BWI76_RS22290
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (N) remove 4,644,889 - -0.4 4,644,923 - +0.4 4,644,923 - -0.6 4,644,961 - +0.8 4,644,963 + BWI76_RS22280 0.10 +0.6 4,645,001 + BWI76_RS22280 0.17 -0.1 4,645,083 - BWI76_RS22280 0.33 -0.5 4,645,202 + BWI76_RS22280 0.55 +0.2 4,645,225 + BWI76_RS22280 0.60 -0.9 4,645,379 + BWI76_RS22280 0.89 +0.0 4,645,409 - -0.3 4,645,770 + BWI76_RS22285 0.20 +0.8 4,645,778 - BWI76_RS22285 0.20 +1.4 4,645,778 - BWI76_RS22285 0.20 +1.0 4,645,789 + BWI76_RS22285 0.21 +0.5 4,646,340 + BWI76_RS22285 0.76 +0.6 4,646,350 - BWI76_RS22285 0.77 +0.0 4,646,357 + BWI76_RS22285 0.78 -0.1 4,646,448 - BWI76_RS22285 0.86 -0.3 4,646,573 - +0.2 4,646,665 + -0.5 4,646,919 - +0.3 4,646,993 - BWI76_RS22290 0.11 +0.3 4,647,091 - BWI76_RS22290 0.17 +0.2 4,647,443 + BWI76_RS22290 0.42 +0.0 4,647,506 - BWI76_RS22290 0.46 -0.1 4,647,515 + BWI76_RS22290 0.47 +0.0
Or see this region's nucleotide sequence