Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18080

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18075 and BWI76_RS18080 are separated by 133 nucleotidesBWI76_RS18080 and BWI76_RS18085 are separated by 144 nucleotidesBWI76_RS18085 and BWI76_RS18090 are separated by 135 nucleotides BWI76_RS18075: BWI76_RS18075 - oligopeptidase B, at 3,754,435 to 3,756,495 _RS18075 BWI76_RS18080: BWI76_RS18080 - protein YebE, at 3,756,629 to 3,757,309 _RS18080 BWI76_RS18085: BWI76_RS18085 - hypothetical protein, at 3,757,454 to 3,757,816 _RS18085 BWI76_RS18090: BWI76_RS18090 - phosphoribosylglycinamide formyltransferase 2, at 3,757,952 to 3,759,130 _RS18090 Position (kb) 3756 3757 3758Strain fitness (log2 ratio) -1 0 1at 3755.856 kb on + strand, within BWI76_RS18075at 3756.276 kb on - strand, within BWI76_RS18075at 3756.525 kb on - strandat 3756.544 kb on + strandat 3756.562 kb on - strandat 3756.570 kb on - strandat 3756.626 kb on + strandat 3756.824 kb on + strand, within BWI76_RS18080at 3757.080 kb on + strand, within BWI76_RS18080at 3757.534 kb on - strand, within BWI76_RS18085at 3757.869 kb on + strandat 3757.992 kb on + strandat 3758.028 kb on - strandat 3758.214 kb on + strand, within BWI76_RS18090

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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3,755,856 + BWI76_RS18075 0.69 -0.3
3,756,276 - BWI76_RS18075 0.89 +0.6
3,756,525 - -0.4
3,756,544 + -0.1
3,756,562 - -0.4
3,756,570 - +0.8
3,756,626 + -0.2
3,756,824 + BWI76_RS18080 0.29 +0.4
3,757,080 + BWI76_RS18080 0.66 +1.1
3,757,534 - BWI76_RS18085 0.22 -1.2
3,757,869 + -0.1
3,757,992 + -0.7
3,758,028 - -0.3
3,758,214 + BWI76_RS18090 0.22 +0.5

Or see this region's nucleotide sequence