Experiment: Thymidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17380 and BWI76_RS17385 are separated by 248 nucleotides BWI76_RS17385 and BWI76_RS17390 are separated by 68 nucleotides BWI76_RS17390 and BWI76_RS17395 are separated by 238 nucleotides BWI76_RS17395 and BWI76_RS17400 are separated by 35 nucleotides
BWI76_RS17380: BWI76_RS17380 - nitrate transporter component, at 3,606,431 to 3,607,687
_RS17380
BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126
_RS17385
BWI76_RS17390: BWI76_RS17390 - DsrE family protein, at 3,609,195 to 3,609,548
_RS17390
BWI76_RS17395: BWI76_RS17395 - hypothetical protein, at 3,609,787 to 3,610,029
_RS17395
BWI76_RS17400: BWI76_RS17400 - transporter, at 3,610,065 to 3,610,745
_RS17400
Position (kb)
3607
3608
3609
3610 Strain fitness (log2 ratio)
-1
0
1
2 at 3607.015 kb on + strand, within BWI76_RS17380 at 3607.519 kb on - strand, within BWI76_RS17380 at 3607.567 kb on - strand at 3607.690 kb on - strand at 3607.735 kb on - strand at 3607.747 kb on + strand at 3607.869 kb on + strand at 3607.973 kb on - strand at 3608.084 kb on + strand, within BWI76_RS17385 at 3608.152 kb on - strand, within BWI76_RS17385 at 3608.211 kb on + strand, within BWI76_RS17385 at 3608.219 kb on - strand, within BWI76_RS17385 at 3608.219 kb on - strand, within BWI76_RS17385 at 3608.221 kb on - strand, within BWI76_RS17385 at 3608.288 kb on + strand, within BWI76_RS17385 at 3608.907 kb on + strand, within BWI76_RS17385 at 3608.923 kb on + strand, within BWI76_RS17385 at 3608.993 kb on + strand, within BWI76_RS17385 at 3609.104 kb on - strand at 3609.104 kb on - strand at 3609.274 kb on + strand, within BWI76_RS17390 at 3609.366 kb on + strand, within BWI76_RS17390 at 3609.702 kb on + strand at 3609.702 kb on + strand at 3609.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (N) remove 3,607,015 + BWI76_RS17380 0.46 +1.2 3,607,519 - BWI76_RS17380 0.87 +1.0 3,607,567 - +1.1 3,607,690 - +0.6 3,607,735 - +1.1 3,607,747 + +1.2 3,607,869 + +1.0 3,607,973 - +1.5 3,608,084 + BWI76_RS17385 0.12 +1.1 3,608,152 - BWI76_RS17385 0.18 +2.3 3,608,211 + BWI76_RS17385 0.23 +1.8 3,608,219 - BWI76_RS17385 0.24 +2.3 3,608,219 - BWI76_RS17385 0.24 +0.9 3,608,221 - BWI76_RS17385 0.24 +1.5 3,608,288 + BWI76_RS17385 0.30 +1.2 3,608,907 + BWI76_RS17385 0.82 +1.1 3,608,923 + BWI76_RS17385 0.83 +1.7 3,608,993 + BWI76_RS17385 0.89 +1.2 3,609,104 - +1.1 3,609,104 - +1.4 3,609,274 + BWI76_RS17390 0.22 -0.2 3,609,366 + BWI76_RS17390 0.48 +0.0 3,609,702 + -0.0 3,609,702 + +0.8 3,609,710 - +0.1
Or see this region's nucleotide sequence