Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17385

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17380 and BWI76_RS17385 are separated by 248 nucleotidesBWI76_RS17385 and BWI76_RS17390 are separated by 68 nucleotidesBWI76_RS17390 and BWI76_RS17395 are separated by 238 nucleotidesBWI76_RS17395 and BWI76_RS17400 are separated by 35 nucleotides BWI76_RS17380: BWI76_RS17380 - nitrate transporter component, at 3,606,431 to 3,607,687 _RS17380 BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126 _RS17385 BWI76_RS17390: BWI76_RS17390 - DsrE family protein, at 3,609,195 to 3,609,548 _RS17390 BWI76_RS17395: BWI76_RS17395 - hypothetical protein, at 3,609,787 to 3,610,029 _RS17395 BWI76_RS17400: BWI76_RS17400 - transporter, at 3,610,065 to 3,610,745 _RS17400 Position (kb) 3607 3608 3609 3610Strain fitness (log2 ratio) -1 0 1 2at 3607.015 kb on + strand, within BWI76_RS17380at 3607.519 kb on - strand, within BWI76_RS17380at 3607.567 kb on - strandat 3607.690 kb on - strandat 3607.735 kb on - strandat 3607.747 kb on + strandat 3607.869 kb on + strandat 3607.973 kb on - strandat 3608.084 kb on + strand, within BWI76_RS17385at 3608.152 kb on - strand, within BWI76_RS17385at 3608.211 kb on + strand, within BWI76_RS17385at 3608.219 kb on - strand, within BWI76_RS17385at 3608.219 kb on - strand, within BWI76_RS17385at 3608.221 kb on - strand, within BWI76_RS17385at 3608.288 kb on + strand, within BWI76_RS17385at 3608.907 kb on + strand, within BWI76_RS17385at 3608.923 kb on + strand, within BWI76_RS17385at 3608.993 kb on + strand, within BWI76_RS17385at 3609.104 kb on - strandat 3609.104 kb on - strandat 3609.274 kb on + strand, within BWI76_RS17390at 3609.366 kb on + strand, within BWI76_RS17390at 3609.702 kb on + strandat 3609.702 kb on + strandat 3609.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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3,607,015 + BWI76_RS17380 0.46 +1.2
3,607,519 - BWI76_RS17380 0.87 +1.0
3,607,567 - +1.1
3,607,690 - +0.6
3,607,735 - +1.1
3,607,747 + +1.2
3,607,869 + +1.0
3,607,973 - +1.5
3,608,084 + BWI76_RS17385 0.12 +1.1
3,608,152 - BWI76_RS17385 0.18 +2.3
3,608,211 + BWI76_RS17385 0.23 +1.8
3,608,219 - BWI76_RS17385 0.24 +2.3
3,608,219 - BWI76_RS17385 0.24 +0.9
3,608,221 - BWI76_RS17385 0.24 +1.5
3,608,288 + BWI76_RS17385 0.30 +1.2
3,608,907 + BWI76_RS17385 0.82 +1.1
3,608,923 + BWI76_RS17385 0.83 +1.7
3,608,993 + BWI76_RS17385 0.89 +1.2
3,609,104 - +1.1
3,609,104 - +1.4
3,609,274 + BWI76_RS17390 0.22 -0.2
3,609,366 + BWI76_RS17390 0.48 +0.0
3,609,702 + -0.0
3,609,702 + +0.8
3,609,710 - +0.1

Or see this region's nucleotide sequence