Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15320

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15310 and BWI76_RS15315 are separated by 117 nucleotidesBWI76_RS15315 and BWI76_RS15320 are separated by 115 nucleotidesBWI76_RS15320 and BWI76_RS15325 are separated by 9 nucleotidesBWI76_RS15325 and BWI76_RS15330 overlap by 1 nucleotides BWI76_RS15310: BWI76_RS15310 - MFS transporter, at 3,206,442 to 3,207,635 _RS15310 BWI76_RS15315: BWI76_RS15315 - DNA-binding protein, at 3,207,753 to 3,208,223 _RS15315 BWI76_RS15320: BWI76_RS15320 - ABC transporter ATP-binding protein, at 3,208,339 to 3,209,037 _RS15320 BWI76_RS15325: BWI76_RS15325 - ABC transporter ATP-binding protein, at 3,209,047 to 3,209,844 _RS15325 BWI76_RS15330: BWI76_RS15330 - urea ABC transporter permease subunit UrtC, at 3,209,844 to 3,210,917 _RS15330 Position (kb) 3208 3209 3210Strain fitness (log2 ratio) -1 0 1at 3207.361 kb on + strand, within BWI76_RS15310at 3207.711 kb on + strandat 3207.730 kb on - strandat 3207.952 kb on + strand, within BWI76_RS15315at 3207.960 kb on - strand, within BWI76_RS15315at 3207.987 kb on + strandat 3207.995 kb on - strand, within BWI76_RS15315at 3209.976 kb on + strand, within BWI76_RS15330at 3209.976 kb on + strand, within BWI76_RS15330at 3209.979 kb on - strand, within BWI76_RS15330

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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3,207,361 + BWI76_RS15310 0.77 -0.1
3,207,711 + -1.2
3,207,730 - +0.2
3,207,952 + BWI76_RS15315 0.42 +0.9
3,207,960 - BWI76_RS15315 0.44 +0.1
3,207,987 + +1.4
3,207,995 - BWI76_RS15315 0.51 +0.2
3,209,976 + BWI76_RS15330 0.12 -0.5
3,209,976 + BWI76_RS15330 0.12 +1.0
3,209,979 - BWI76_RS15330 0.13 -0.1

Or see this region's nucleotide sequence