Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13990

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13985 and BWI76_RS13990 overlap by 4 nucleotidesBWI76_RS13990 and BWI76_RS13995 are separated by 184 nucleotides BWI76_RS13985: BWI76_RS13985 - urea carboxylase, at 2,918,291 to 2,921,896 _RS13985 BWI76_RS13990: BWI76_RS13990 - allophanate hydrolase, at 2,921,893 to 2,923,689 _RS13990 BWI76_RS13995: BWI76_RS13995 - penicillin-binding protein 2, at 2,923,874 to 2,925,793 _RS13995 Position (kb) 2921 2922 2923 2924Strain fitness (log2 ratio) -2 -1 0 1at 2920.966 kb on + strand, within BWI76_RS13985at 2921.164 kb on + strand, within BWI76_RS13985at 2921.563 kb on - strandat 2921.704 kb on + strandat 2922.522 kb on - strand, within BWI76_RS13990at 2922.585 kb on + strand, within BWI76_RS13990at 2922.966 kb on + strand, within BWI76_RS13990at 2923.183 kb on - strand, within BWI76_RS13990at 2923.518 kb on - strandat 2924.282 kb on - strand, within BWI76_RS13995at 2924.454 kb on - strand, within BWI76_RS13995at 2924.576 kb on + strand, within BWI76_RS13995

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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2,920,966 + BWI76_RS13985 0.74 +0.1
2,921,164 + BWI76_RS13985 0.80 -0.3
2,921,563 - +0.5
2,921,704 + +1.0
2,922,522 - BWI76_RS13990 0.35 +0.7
2,922,585 + BWI76_RS13990 0.39 +0.3
2,922,966 + BWI76_RS13990 0.60 +0.2
2,923,183 - BWI76_RS13990 0.72 +1.0
2,923,518 - +0.4
2,924,282 - BWI76_RS13995 0.21 -0.4
2,924,454 - BWI76_RS13995 0.30 -0.1
2,924,576 + BWI76_RS13995 0.37 -2.1

Or see this region's nucleotide sequence