Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10785

Experiment: Thymidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10780 and BWI76_RS10785 are separated by 286 nucleotidesBWI76_RS10785 and BWI76_RS10790 overlap by 4 nucleotidesBWI76_RS10790 and BWI76_RS10795 are separated by 193 nucleotides BWI76_RS10780: BWI76_RS10780 - pyrimidine utilization protein A, at 2,274,838 to 2,275,929 _RS10780 BWI76_RS10785: BWI76_RS10785 - transcriptional regulator, at 2,276,216 to 2,276,854 _RS10785 BWI76_RS10790: BWI76_RS10790 - hypothetical protein, at 2,276,851 to 2,277,246 _RS10790 BWI76_RS10795: BWI76_RS10795 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,277,440 to 2,281,402 _RS10795 Position (kb) 2276 2277Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2275.360 kb on + strand, within BWI76_RS10780at 2275.368 kb on - strand, within BWI76_RS10780at 2275.654 kb on - strand, within BWI76_RS10780at 2275.784 kb on + strand, within BWI76_RS10780at 2275.861 kb on + strandat 2275.864 kb on - strandat 2275.869 kb on - strandat 2275.984 kb on - strandat 2276.219 kb on + strandat 2276.219 kb on + strandat 2276.227 kb on - strandat 2276.227 kb on - strandat 2276.385 kb on + strand, within BWI76_RS10785at 2276.393 kb on - strand, within BWI76_RS10785at 2276.402 kb on - strand, within BWI76_RS10785at 2276.482 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785at 2276.942 kb on + strand, within BWI76_RS10790at 2277.019 kb on + strand, within BWI76_RS10790at 2277.082 kb on + strand, within BWI76_RS10790at 2277.125 kb on + strand, within BWI76_RS10790at 2277.133 kb on - strand, within BWI76_RS10790at 2277.303 kb on + strandat 2277.330 kb on - strandat 2277.515 kb on - strandat 2277.846 kb on - strand, within BWI76_RS10795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
remove
2,275,360 + BWI76_RS10780 0.48 -2.2
2,275,368 - BWI76_RS10780 0.49 -2.7
2,275,654 - BWI76_RS10780 0.75 -4.9
2,275,784 + BWI76_RS10780 0.87 -3.9
2,275,861 + -2.9
2,275,864 - -4.5
2,275,869 - -5.3
2,275,984 - -3.9
2,276,219 + +1.5
2,276,219 + +0.3
2,276,227 - +1.9
2,276,227 - +1.7
2,276,385 + BWI76_RS10785 0.26 +1.8
2,276,393 - BWI76_RS10785 0.28 +2.0
2,276,402 - BWI76_RS10785 0.29 +2.3
2,276,482 - BWI76_RS10785 0.42 +2.3
2,276,525 - BWI76_RS10785 0.48 +1.9
2,276,525 - BWI76_RS10785 0.48 +2.0
2,276,728 + BWI76_RS10785 0.80 +2.3
2,276,728 + BWI76_RS10785 0.80 +2.7
2,276,942 + BWI76_RS10790 0.23 +0.7
2,277,019 + BWI76_RS10790 0.42 +0.7
2,277,082 + BWI76_RS10790 0.58 -0.5
2,277,125 + BWI76_RS10790 0.69 +1.2
2,277,133 - BWI76_RS10790 0.71 -0.2
2,277,303 + +0.4
2,277,330 - +0.4
2,277,515 - -0.0
2,277,846 - BWI76_RS10795 0.10 +1.0

Or see this region's nucleotide sequence