Experiment: Thymidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10780 and BWI76_RS10785 are separated by 286 nucleotides BWI76_RS10785 and BWI76_RS10790 overlap by 4 nucleotides BWI76_RS10790 and BWI76_RS10795 are separated by 193 nucleotides
BWI76_RS10780: BWI76_RS10780 - pyrimidine utilization protein A, at 2,274,838 to 2,275,929
_RS10780
BWI76_RS10785: BWI76_RS10785 - transcriptional regulator, at 2,276,216 to 2,276,854
_RS10785
BWI76_RS10790: BWI76_RS10790 - hypothetical protein, at 2,276,851 to 2,277,246
_RS10790
BWI76_RS10795: BWI76_RS10795 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) , at 2,277,440 to 2,281,402
_RS10795
Position (kb)
2276
2277 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2275.360 kb on + strand, within BWI76_RS10780 at 2275.368 kb on - strand, within BWI76_RS10780 at 2275.654 kb on - strand, within BWI76_RS10780 at 2275.784 kb on + strand, within BWI76_RS10780 at 2275.861 kb on + strand at 2275.864 kb on - strand at 2275.869 kb on - strand at 2275.984 kb on - strand at 2276.219 kb on + strand at 2276.219 kb on + strand at 2276.227 kb on - strand at 2276.227 kb on - strand at 2276.385 kb on + strand, within BWI76_RS10785 at 2276.393 kb on - strand, within BWI76_RS10785 at 2276.402 kb on - strand, within BWI76_RS10785 at 2276.482 kb on - strand, within BWI76_RS10785 at 2276.525 kb on - strand, within BWI76_RS10785 at 2276.525 kb on - strand, within BWI76_RS10785 at 2276.728 kb on + strand, within BWI76_RS10785 at 2276.728 kb on + strand, within BWI76_RS10785 at 2276.942 kb on + strand, within BWI76_RS10790 at 2277.019 kb on + strand, within BWI76_RS10790 at 2277.082 kb on + strand, within BWI76_RS10790 at 2277.125 kb on + strand, within BWI76_RS10790 at 2277.133 kb on - strand, within BWI76_RS10790 at 2277.303 kb on + strand at 2277.330 kb on - strand at 2277.515 kb on - strand at 2277.846 kb on - strand, within BWI76_RS10795
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (N) remove 2,275,360 + BWI76_RS10780 0.48 -2.2 2,275,368 - BWI76_RS10780 0.49 -2.7 2,275,654 - BWI76_RS10780 0.75 -4.9 2,275,784 + BWI76_RS10780 0.87 -3.9 2,275,861 + -2.9 2,275,864 - -4.5 2,275,869 - -5.3 2,275,984 - -3.9 2,276,219 + +1.5 2,276,219 + +0.3 2,276,227 - +1.9 2,276,227 - +1.7 2,276,385 + BWI76_RS10785 0.26 +1.8 2,276,393 - BWI76_RS10785 0.28 +2.0 2,276,402 - BWI76_RS10785 0.29 +2.3 2,276,482 - BWI76_RS10785 0.42 +2.3 2,276,525 - BWI76_RS10785 0.48 +1.9 2,276,525 - BWI76_RS10785 0.48 +2.0 2,276,728 + BWI76_RS10785 0.80 +2.3 2,276,728 + BWI76_RS10785 0.80 +2.7 2,276,942 + BWI76_RS10790 0.23 +0.7 2,277,019 + BWI76_RS10790 0.42 +0.7 2,277,082 + BWI76_RS10790 0.58 -0.5 2,277,125 + BWI76_RS10790 0.69 +1.2 2,277,133 - BWI76_RS10790 0.71 -0.2 2,277,303 + +0.4 2,277,330 - +0.4 2,277,515 - -0.0 2,277,846 - BWI76_RS10795 0.10 +1.0
Or see this region's nucleotide sequence