Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10395

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10390 and BWI76_RS10395 are separated by 518 nucleotidesBWI76_RS10395 and BWI76_RS10400 are separated by 355 nucleotidesBWI76_RS10400 and BWI76_RS10405 are separated by 125 nucleotides BWI76_RS10390: BWI76_RS10390 - amino acid ABC transporter, at 2,199,764 to 2,200,588 _RS10390 BWI76_RS10395: BWI76_RS10395 - cold-shock protein, at 2,201,107 to 2,201,319 _RS10395 BWI76_RS10400: BWI76_RS10400 - hypothetical protein, at 2,201,675 to 2,201,860 _RS10400 BWI76_RS10405: BWI76_RS10405 - cold-shock protein, at 2,201,986 to 2,202,207 _RS10405 Position (kb) 2201 2202Strain fitness (log2 ratio) -2 -1 0 1 2at 2200.149 kb on - strand, within BWI76_RS10390at 2200.233 kb on + strand, within BWI76_RS10390at 2200.235 kb on - strand, within BWI76_RS10390at 2200.299 kb on + strand, within BWI76_RS10390at 2200.307 kb on - strand, within BWI76_RS10390at 2200.307 kb on - strand, within BWI76_RS10390at 2200.307 kb on - strand, within BWI76_RS10390at 2200.337 kb on + strand, within BWI76_RS10390at 2200.341 kb on - strand, within BWI76_RS10390at 2200.371 kb on - strand, within BWI76_RS10390at 2200.387 kb on + strand, within BWI76_RS10390at 2200.398 kb on + strand, within BWI76_RS10390at 2200.399 kb on + strandat 2200.407 kb on - strand, within BWI76_RS10390at 2200.408 kb on - strand, within BWI76_RS10390at 2200.408 kb on - strand, within BWI76_RS10390at 2200.413 kb on - strand, within BWI76_RS10390at 2200.413 kb on - strand, within BWI76_RS10390at 2200.438 kb on - strand, within BWI76_RS10390at 2200.452 kb on + strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.465 kb on - strand, within BWI76_RS10390at 2200.465 kb on - strand, within BWI76_RS10390at 2200.465 kb on - strandat 2200.467 kb on + strand, within BWI76_RS10390at 2200.470 kb on - strand, within BWI76_RS10390at 2200.470 kb on - strand, within BWI76_RS10390at 2200.475 kb on - strand, within BWI76_RS10390at 2200.475 kb on - strand, within BWI76_RS10390at 2200.514 kb on + strandat 2200.522 kb on - strandat 2200.548 kb on + strandat 2200.598 kb on - strandat 2200.650 kb on - strandat 2200.650 kb on - strandat 2200.694 kb on - strandat 2200.694 kb on - strandat 2200.784 kb on - strandat 2200.866 kb on + strandat 2200.875 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.067 kb on - strandat 2201.085 kb on - strandat 2201.114 kb on + strandat 2201.114 kb on + strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.127 kb on - strandat 2201.178 kb on - strand, within BWI76_RS10395at 2201.183 kb on - strand, within BWI76_RS10395at 2201.190 kb on - strand, within BWI76_RS10395at 2201.248 kb on + strandat 2201.255 kb on - strand, within BWI76_RS10395at 2201.256 kb on - strand, within BWI76_RS10395at 2201.256 kb on - strand, within BWI76_RS10395at 2201.270 kb on - strandat 2201.270 kb on - strand, within BWI76_RS10395at 2201.270 kb on - strand, within BWI76_RS10395at 2201.288 kb on - strand, within BWI76_RS10395at 2201.344 kb on - strandat 2201.344 kb on - strandat 2201.344 kb on - strandat 2201.345 kb on - strandat 2201.345 kb on - strandat 2201.379 kb on - strandat 2201.425 kb on + strandat 2201.425 kb on + strandat 2201.427 kb on + strandat 2201.433 kb on - strandat 2201.471 kb on + strandat 2201.471 kb on + strandat 2201.550 kb on + strandat 2201.573 kb on + strandat 2201.584 kb on + strandat 2201.591 kb on + strandat 2201.639 kb on + strandat 2201.698 kb on + strand, within BWI76_RS10400at 2201.698 kb on + strand, within BWI76_RS10400at 2201.706 kb on - strand, within BWI76_RS10400at 2201.711 kb on - strand, within BWI76_RS10400at 2201.724 kb on - strand, within BWI76_RS10400at 2201.765 kb on + strand, within BWI76_RS10400at 2201.877 kb on + strandat 2201.933 kb on + strandat 2201.936 kb on - strandat 2201.941 kb on - strandat 2201.941 kb on - strandat 2201.941 kb on - strandat 2201.941 kb on - strandat 2201.965 kb on - strandat 2201.972 kb on + strandat 2201.986 kb on - strandat 2202.004 kb on + strandat 2202.007 kb on + strandat 2202.012 kb on - strand, within BWI76_RS10405at 2202.017 kb on + strand, within BWI76_RS10405at 2202.025 kb on - strand, within BWI76_RS10405at 2202.027 kb on + strand, within BWI76_RS10405at 2202.071 kb on - strand, within BWI76_RS10405at 2202.082 kb on - strand, within BWI76_RS10405at 2202.084 kb on + strand, within BWI76_RS10405at 2202.086 kb on + strand, within BWI76_RS10405at 2202.150 kb on + strand, within BWI76_RS10405at 2202.153 kb on + strand, within BWI76_RS10405at 2202.160 kb on + strand, within BWI76_RS10405at 2202.161 kb on - strand, within BWI76_RS10405at 2202.161 kb on - strand, within BWI76_RS10405at 2202.170 kb on + strand, within BWI76_RS10405at 2202.171 kb on - strand, within BWI76_RS10405at 2202.175 kb on + strand, within BWI76_RS10405at 2202.183 kb on - strand, within BWI76_RS10405at 2202.183 kb on - strand, within BWI76_RS10405at 2202.185 kb on + strandat 2202.185 kb on + strandat 2202.185 kb on + strandat 2202.185 kb on + strandat 2202.185 kb on + strandat 2202.185 kb on + strandat 2202.185 kb on + strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.193 kb on - strandat 2202.233 kb on + strandat 2202.233 kb on + strandat 2202.233 kb on + strandat 2202.233 kb on + strandat 2202.233 kb on + strandat 2202.241 kb on - strandat 2202.241 kb on - strandat 2202.254 kb on + strandat 2202.268 kb on + strandat 2202.273 kb on + strandat 2202.284 kb on + strandat 2202.299 kb on - strandat 2202.309 kb on + strandat 2202.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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2,200,149 - BWI76_RS10390 0.47 +1.5
2,200,233 + BWI76_RS10390 0.57 -0.9
2,200,235 - BWI76_RS10390 0.57 +0.1
2,200,299 + BWI76_RS10390 0.65 +0.7
2,200,307 - BWI76_RS10390 0.66 +1.1
2,200,307 - BWI76_RS10390 0.66 +0.6
2,200,307 - BWI76_RS10390 0.66 +0.0
2,200,337 + BWI76_RS10390 0.69 -0.2
2,200,341 - BWI76_RS10390 0.70 -0.0
2,200,371 - BWI76_RS10390 0.74 -0.6
2,200,387 + BWI76_RS10390 0.76 -0.7
2,200,398 + BWI76_RS10390 0.77 +1.0
2,200,399 + -0.8
2,200,407 - BWI76_RS10390 0.78 -2.7
2,200,408 - BWI76_RS10390 0.78 +0.4
2,200,408 - BWI76_RS10390 0.78 +0.1
2,200,413 - BWI76_RS10390 0.79 -0.5
2,200,413 - BWI76_RS10390 0.79 +0.0
2,200,438 - BWI76_RS10390 0.82 +0.7
2,200,452 + BWI76_RS10390 0.83 -0.4
2,200,460 - BWI76_RS10390 0.84 -1.3
2,200,460 - BWI76_RS10390 0.84 -1.3
2,200,460 - BWI76_RS10390 0.84 -0.6
2,200,460 - BWI76_RS10390 0.84 -0.6
2,200,460 - BWI76_RS10390 0.84 +0.3
2,200,460 - BWI76_RS10390 0.84 -0.2
2,200,460 - BWI76_RS10390 0.84 -0.8
2,200,465 - BWI76_RS10390 0.85 -0.4
2,200,465 - BWI76_RS10390 0.85 -0.5
2,200,465 - +0.0
2,200,467 + BWI76_RS10390 0.85 +0.0
2,200,470 - BWI76_RS10390 0.86 +0.3
2,200,470 - BWI76_RS10390 0.86 +0.1
2,200,475 - BWI76_RS10390 0.86 -0.7
2,200,475 - BWI76_RS10390 0.86 -0.4
2,200,514 + +0.3
2,200,522 - +1.6
2,200,548 + +0.0
2,200,598 - +0.8
2,200,650 - +0.4
2,200,650 - +0.2
2,200,694 - -0.3
2,200,694 - -0.3
2,200,784 - +0.2
2,200,866 + +2.4
2,200,875 + -1.3
2,200,975 + +0.2
2,200,975 + -0.9
2,200,975 + +0.2
2,200,975 + -1.1
2,200,975 + +0.1
2,201,056 - -0.4
2,201,056 - -0.6
2,201,056 - -0.3
2,201,067 - +0.8
2,201,085 - +0.3
2,201,114 + -1.2
2,201,114 + -1.0
2,201,122 - +0.2
2,201,122 - -0.2
2,201,122 - -0.1
2,201,122 - -1.0
2,201,122 - +0.2
2,201,122 - +0.8
2,201,122 - -0.6
2,201,122 - +0.7
2,201,122 - -0.0
2,201,122 - +0.4
2,201,122 - +0.8
2,201,122 - -0.1
2,201,122 - -0.7
2,201,122 - -0.8
2,201,127 - -0.8
2,201,178 - BWI76_RS10395 0.33 +0.7
2,201,183 - BWI76_RS10395 0.36 +0.8
2,201,190 - BWI76_RS10395 0.39 +0.3
2,201,248 + +0.4
2,201,255 - BWI76_RS10395 0.69 +1.4
2,201,256 - BWI76_RS10395 0.70 +0.7
2,201,256 - BWI76_RS10395 0.70 +0.0
2,201,270 - -0.0
2,201,270 - BWI76_RS10395 0.77 +0.7
2,201,270 - BWI76_RS10395 0.77 +0.2
2,201,288 - BWI76_RS10395 0.85 +0.8
2,201,344 - +1.8
2,201,344 - -0.1
2,201,344 - -0.9
2,201,345 - +0.9
2,201,345 - -1.0
2,201,379 - -0.0
2,201,425 + -1.6
2,201,425 + -0.8
2,201,427 + +0.2
2,201,433 - +0.2
2,201,471 + +0.1
2,201,471 + -0.2
2,201,550 + -1.1
2,201,573 + -1.1
2,201,584 + -0.6
2,201,591 + -0.3
2,201,639 + +0.4
2,201,698 + BWI76_RS10400 0.12 -0.8
2,201,698 + BWI76_RS10400 0.12 +0.4
2,201,706 - BWI76_RS10400 0.17 +0.7
2,201,711 - BWI76_RS10400 0.19 -0.1
2,201,724 - BWI76_RS10400 0.26 +0.8
2,201,765 + BWI76_RS10400 0.48 +0.5
2,201,877 + +0.6
2,201,933 + +0.0
2,201,936 - +1.4
2,201,941 - +0.2
2,201,941 - -1.4
2,201,941 - +0.8
2,201,941 - -0.2
2,201,965 - -0.9
2,201,972 + +1.0
2,201,986 - -0.7
2,202,004 + +1.3
2,202,007 + +0.4
2,202,012 - BWI76_RS10405 0.12 +0.2
2,202,017 + BWI76_RS10405 0.14 +1.0
2,202,025 - BWI76_RS10405 0.18 +0.4
2,202,027 + BWI76_RS10405 0.18 +0.5
2,202,071 - BWI76_RS10405 0.38 -0.3
2,202,082 - BWI76_RS10405 0.43 +1.4
2,202,084 + BWI76_RS10405 0.44 -1.0
2,202,086 + BWI76_RS10405 0.45 +1.6
2,202,150 + BWI76_RS10405 0.74 +1.0
2,202,153 + BWI76_RS10405 0.75 -0.1
2,202,160 + BWI76_RS10405 0.78 +0.7
2,202,161 - BWI76_RS10405 0.79 -0.6
2,202,161 - BWI76_RS10405 0.79 -0.0
2,202,170 + BWI76_RS10405 0.83 +0.7
2,202,171 - BWI76_RS10405 0.83 +0.3
2,202,175 + BWI76_RS10405 0.85 -0.5
2,202,183 - BWI76_RS10405 0.89 -1.3
2,202,183 - BWI76_RS10405 0.89 -0.1
2,202,185 + +0.5
2,202,185 + -0.2
2,202,185 + +0.2
2,202,185 + +0.0
2,202,185 + -0.2
2,202,185 + -0.3
2,202,185 + +0.6
2,202,193 - -0.1
2,202,193 - +0.4
2,202,193 - +0.2
2,202,193 - +0.3
2,202,193 - +0.1
2,202,193 - -0.1
2,202,193 - -1.2
2,202,193 - +0.1
2,202,193 - -0.9
2,202,193 - -0.1
2,202,193 - +0.0
2,202,193 - -2.2
2,202,193 - +0.0
2,202,233 + -0.3
2,202,233 + -0.5
2,202,233 + +1.0
2,202,233 + -0.2
2,202,233 + -0.0
2,202,241 - +0.9
2,202,241 - +2.0
2,202,254 + +0.2
2,202,268 + +0.1
2,202,273 + +0.1
2,202,284 + -0.4
2,202,299 - +0.6
2,202,309 + +0.9
2,202,309 + -0.2

Or see this region's nucleotide sequence