Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09110

Experiment: Thymidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09100 and BWI76_RS09105 are separated by 52 nucleotidesBWI76_RS09105 and BWI76_RS09110 are separated by 1 nucleotidesBWI76_RS09110 and BWI76_RS09115 are separated by 182 nucleotides BWI76_RS09100: BWI76_RS09100 - glutathione ABC transporter substrate-binding protein GsiB, at 1,922,108 to 1,923,646 _RS09100 BWI76_RS09105: BWI76_RS09105 - glutathione ABC transporter permease GsiC, at 1,923,699 to 1,924,619 _RS09105 BWI76_RS09110: BWI76_RS09110 - glutathione ABC transporter permease GsiD, at 1,924,621 to 1,925,532 _RS09110 BWI76_RS09115: BWI76_RS09115 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,925,715 to 1,927,040 _RS09115 Position (kb) 1924 1925 1926Strain fitness (log2 ratio) -2 -1 0 1at 1923.992 kb on + strand, within BWI76_RS09105at 1924.096 kb on - strand, within BWI76_RS09105at 1924.452 kb on + strand, within BWI76_RS09105at 1924.671 kb on + strandat 1924.681 kb on + strandat 1924.754 kb on + strand, within BWI76_RS09110at 1924.779 kb on + strand, within BWI76_RS09110at 1924.996 kb on + strand, within BWI76_RS09110at 1925.639 kb on + strandat 1925.647 kb on - strandat 1925.647 kb on - strandat 1925.654 kb on + strandat 1926.086 kb on - strand, within BWI76_RS09115at 1926.161 kb on + strandat 1926.194 kb on + strand, within BWI76_RS09115at 1926.377 kb on + strand, within BWI76_RS09115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
remove
1,923,992 + BWI76_RS09105 0.32 -0.4
1,924,096 - BWI76_RS09105 0.43 -1.5
1,924,452 + BWI76_RS09105 0.82 -0.6
1,924,671 + -0.6
1,924,681 + -0.0
1,924,754 + BWI76_RS09110 0.15 -1.4
1,924,779 + BWI76_RS09110 0.17 -0.7
1,924,996 + BWI76_RS09110 0.41 -2.2
1,925,639 + +0.1
1,925,647 - +0.1
1,925,647 - +0.4
1,925,654 + -0.3
1,926,086 - BWI76_RS09115 0.28 -1.1
1,926,161 + +0.0
1,926,194 + BWI76_RS09115 0.36 -1.4
1,926,377 + BWI76_RS09115 0.50 +0.4

Or see this region's nucleotide sequence