Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06935

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06925 and BWI76_RS06930 overlap by 14 nucleotidesBWI76_RS06930 and BWI76_RS06935 are separated by 96 nucleotidesBWI76_RS06935 and BWI76_RS06940 are separated by 61 nucleotidesBWI76_RS06940 and BWI76_RS06945 are separated by 28 nucleotides BWI76_RS06925: BWI76_RS06925 - iron ABC transporter ATP-binding protein FetA, at 1,455,095 to 1,455,775 _RS06925 BWI76_RS06930: BWI76_RS06930 - iron export ABC transporter permease subunit FetB, at 1,455,762 to 1,456,544 _RS06930 BWI76_RS06935: BWI76_RS06935 - co-chaperone YbbN, at 1,456,641 to 1,457,495 _RS06935 BWI76_RS06940: BWI76_RS06940 - short-chain dehydrogenase/reductase, at 1,457,557 to 1,458,327 _RS06940 BWI76_RS06945: BWI76_RS06945 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,458,356 to 1,459,012 _RS06945 Position (kb) 1456 1457 1458Strain fitness (log2 ratio) -1 0 1 2 3 4at 1455.670 kb on + strand, within BWI76_RS06925at 1455.677 kb on + strand, within BWI76_RS06925at 1455.677 kb on + strand, within BWI76_RS06925at 1455.677 kb on + strand, within BWI76_RS06925at 1455.685 kb on - strand, within BWI76_RS06925at 1455.685 kb on - strand, within BWI76_RS06925at 1455.715 kb on - strandat 1455.789 kb on + strandat 1455.907 kb on - strand, within BWI76_RS06930at 1455.982 kb on + strand, within BWI76_RS06930at 1456.071 kb on + strand, within BWI76_RS06930at 1456.071 kb on + strand, within BWI76_RS06930at 1456.071 kb on + strand, within BWI76_RS06930at 1456.079 kb on - strand, within BWI76_RS06930at 1456.085 kb on - strandat 1456.247 kb on + strand, within BWI76_RS06930at 1456.444 kb on - strand, within BWI76_RS06930at 1456.518 kb on - strandat 1456.760 kb on - strand, within BWI76_RS06935at 1456.840 kb on - strand, within BWI76_RS06935at 1457.010 kb on + strand, within BWI76_RS06935at 1457.018 kb on - strandat 1457.088 kb on - strand, within BWI76_RS06935at 1457.212 kb on - strand, within BWI76_RS06935at 1457.358 kb on + strand, within BWI76_RS06935at 1457.451 kb on + strandat 1458.251 kb on - strandat 1458.371 kb on + strandat 1458.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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1,455,670 + BWI76_RS06925 0.84 +0.5
1,455,677 + BWI76_RS06925 0.85 +0.4
1,455,677 + BWI76_RS06925 0.85 -0.8
1,455,677 + BWI76_RS06925 0.85 +0.5
1,455,685 - BWI76_RS06925 0.87 -0.6
1,455,685 - BWI76_RS06925 0.87 -0.1
1,455,715 - +0.9
1,455,789 + -0.1
1,455,907 - BWI76_RS06930 0.19 -1.1
1,455,982 + BWI76_RS06930 0.28 -0.1
1,456,071 + BWI76_RS06930 0.39 +0.2
1,456,071 + BWI76_RS06930 0.39 +0.2
1,456,071 + BWI76_RS06930 0.39 +0.8
1,456,079 - BWI76_RS06930 0.40 +1.5
1,456,085 - +0.1
1,456,247 + BWI76_RS06930 0.62 +0.9
1,456,444 - BWI76_RS06930 0.87 +0.7
1,456,518 - +0.1
1,456,760 - BWI76_RS06935 0.14 +1.6
1,456,840 - BWI76_RS06935 0.23 +1.1
1,457,010 + BWI76_RS06935 0.43 +0.4
1,457,018 - +4.1
1,457,088 - BWI76_RS06935 0.52 +0.8
1,457,212 - BWI76_RS06935 0.67 +0.5
1,457,358 + BWI76_RS06935 0.84 +1.0
1,457,451 + +0.6
1,458,251 - -1.0
1,458,371 + +0.0
1,458,371 + -0.2

Or see this region's nucleotide sequence