Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3723

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3722 and Rru_A3723 are separated by 142 nucleotidesRru_A3723 and Rru_A3724 are separated by 432 nucleotides Rru_A3722: Rru_A3722 - hypothetical protein (NCBI), at 4,272,966 to 4,273,880 _A3722 Rru_A3723: Rru_A3723 - Glutathionylspermidine amidase (NCBI), at 4,274,023 to 4,275,951 _A3723 Rru_A3724: Rru_A3724 - ABC transporter component (NCBI), at 4,276,384 to 4,277,166 _A3724 Position (kb) 4274 4275 4276Strain fitness (log2 ratio) -2 -1 0 1 2at 4273.122 kb on + strand, within Rru_A3722at 4273.168 kb on - strand, within Rru_A3722at 4273.257 kb on + strand, within Rru_A3722at 4273.257 kb on + strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.383 kb on - strand, within Rru_A3722at 4273.402 kb on - strand, within Rru_A3722at 4273.532 kb on + strand, within Rru_A3722at 4273.533 kb on - strand, within Rru_A3722at 4273.533 kb on - strand, within Rru_A3722at 4273.602 kb on + strand, within Rru_A3722at 4273.602 kb on + strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.620 kb on + strand, within Rru_A3722at 4273.621 kb on - strand, within Rru_A3722at 4273.621 kb on - strand, within Rru_A3722at 4273.737 kb on - strand, within Rru_A3722at 4273.788 kb on + strand, within Rru_A3722at 4273.789 kb on - strandat 4273.789 kb on - strandat 4273.789 kb on - strandat 4273.789 kb on - strandat 4273.971 kb on - strandat 4273.971 kb on - strandat 4274.039 kb on - strandat 4274.074 kb on + strandat 4274.099 kb on - strandat 4274.111 kb on - strandat 4274.111 kb on - strandat 4274.176 kb on + strandat 4274.176 kb on + strandat 4274.176 kb on + strandat 4274.177 kb on - strandat 4274.187 kb on + strandat 4274.187 kb on + strandat 4274.187 kb on + strandat 4274.188 kb on - strandat 4274.188 kb on - strandat 4274.188 kb on - strandat 4274.188 kb on - strandat 4274.225 kb on - strand, within Rru_A3723at 4274.240 kb on - strand, within Rru_A3723at 4274.240 kb on - strand, within Rru_A3723at 4274.266 kb on + strand, within Rru_A3723at 4274.266 kb on + strand, within Rru_A3723at 4274.266 kb on + strand, within Rru_A3723at 4274.267 kb on - strand, within Rru_A3723at 4274.267 kb on - strand, within Rru_A3723at 4274.504 kb on - strand, within Rru_A3723at 4274.504 kb on - strand, within Rru_A3723at 4274.504 kb on - strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.738 kb on - strand, within Rru_A3723at 4274.738 kb on - strand, within Rru_A3723at 4274.739 kb on + strand, within Rru_A3723at 4274.739 kb on + strand, within Rru_A3723at 4274.740 kb on - strand, within Rru_A3723at 4274.740 kb on - strand, within Rru_A3723at 4274.794 kb on + strand, within Rru_A3723at 4274.794 kb on + strand, within Rru_A3723at 4274.794 kb on + strand, within Rru_A3723at 4274.795 kb on - strand, within Rru_A3723at 4274.867 kb on - strand, within Rru_A3723at 4275.031 kb on + strand, within Rru_A3723at 4275.032 kb on - strand, within Rru_A3723at 4275.032 kb on - strand, within Rru_A3723at 4275.032 kb on - strand, within Rru_A3723at 4275.032 kb on - strand, within Rru_A3723at 4275.057 kb on + strand, within Rru_A3723at 4275.094 kb on + strand, within Rru_A3723at 4275.095 kb on - strand, within Rru_A3723at 4275.095 kb on - strand, within Rru_A3723at 4275.097 kb on + strand, within Rru_A3723at 4275.097 kb on + strand, within Rru_A3723at 4275.097 kb on + strand, within Rru_A3723at 4275.097 kb on + strand, within Rru_A3723at 4275.098 kb on - strand, within Rru_A3723at 4275.098 kb on - strand, within Rru_A3723at 4275.220 kb on + strand, within Rru_A3723at 4275.221 kb on - strand, within Rru_A3723at 4275.232 kb on + strand, within Rru_A3723at 4275.232 kb on + strand, within Rru_A3723at 4275.232 kb on + strand, within Rru_A3723at 4275.233 kb on - strand, within Rru_A3723at 4275.233 kb on - strand, within Rru_A3723at 4275.233 kb on - strand, within Rru_A3723at 4275.233 kb on - strand, within Rru_A3723at 4275.583 kb on + strand, within Rru_A3723at 4275.583 kb on + strand, within Rru_A3723at 4275.583 kb on + strand, within Rru_A3723at 4275.583 kb on + strand, within Rru_A3723at 4275.583 kb on + strand, within Rru_A3723at 4275.584 kb on - strand, within Rru_A3723at 4275.584 kb on - strand, within Rru_A3723at 4275.584 kb on - strand, within Rru_A3723at 4275.584 kb on - strand, within Rru_A3723at 4275.584 kb on - strand, within Rru_A3723at 4275.584 kb on - strand, within Rru_A3723at 4275.634 kb on + strand, within Rru_A3723at 4275.635 kb on - strand, within Rru_A3723at 4275.745 kb on + strand, within Rru_A3723at 4275.745 kb on + strand, within Rru_A3723at 4275.745 kb on + strand, within Rru_A3723at 4275.746 kb on - strand, within Rru_A3723at 4275.746 kb on - strand, within Rru_A3723at 4275.950 kb on - strandat 4276.216 kb on - strandat 4276.216 kb on - strandat 4276.252 kb on - strandat 4276.434 kb on + strandat 4276.434 kb on + strandat 4276.435 kb on - strandat 4276.435 kb on - strandat 4276.435 kb on - strandat 4276.435 kb on - strandat 4276.951 kb on - strand, within Rru_A3724at 4276.951 kb on - strand, within Rru_A3724

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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4,273,122 + Rru_A3722 0.17 +0.0
4,273,168 - Rru_A3722 0.22 +0.8
4,273,257 + Rru_A3722 0.32 +0.0
4,273,257 + Rru_A3722 0.32 +0.2
4,273,258 - Rru_A3722 0.32 +1.2
4,273,258 - Rru_A3722 0.32 +0.0
4,273,258 - Rru_A3722 0.32 -1.6
4,273,258 - Rru_A3722 0.32 +1.0
4,273,383 - Rru_A3722 0.46 -1.0
4,273,402 - Rru_A3722 0.48 +0.9
4,273,532 + Rru_A3722 0.62 -0.3
4,273,533 - Rru_A3722 0.62 +0.0
4,273,533 - Rru_A3722 0.62 -1.0
4,273,602 + Rru_A3722 0.70 -0.1
4,273,602 + Rru_A3722 0.70 -0.5
4,273,603 - Rru_A3722 0.70 +0.0
4,273,603 - Rru_A3722 0.70 +1.3
4,273,603 - Rru_A3722 0.70 +0.0
4,273,603 - Rru_A3722 0.70 -1.0
4,273,603 - Rru_A3722 0.70 +0.9
4,273,603 - Rru_A3722 0.70 +1.4
4,273,620 + Rru_A3722 0.71 +0.0
4,273,621 - Rru_A3722 0.72 +0.2
4,273,621 - Rru_A3722 0.72 +1.3
4,273,737 - Rru_A3722 0.84 +0.0
4,273,788 + Rru_A3722 0.90 +0.0
4,273,789 - +0.1
4,273,789 - +0.8
4,273,789 - +0.2
4,273,789 - +0.6
4,273,971 - +1.5
4,273,971 - +1.2
4,274,039 - +0.0
4,274,074 + +0.0
4,274,099 - +0.6
4,274,111 - +1.3
4,274,111 - +0.3
4,274,176 + +0.0
4,274,176 + -0.4
4,274,176 + +0.8
4,274,177 - +0.0
4,274,187 + +0.5
4,274,187 + +0.0
4,274,187 + +0.6
4,274,188 - +0.2
4,274,188 - +0.0
4,274,188 - +0.2
4,274,188 - +0.0
4,274,225 - Rru_A3723 0.10 -0.4
4,274,240 - Rru_A3723 0.11 +0.0
4,274,240 - Rru_A3723 0.11 +1.0
4,274,266 + Rru_A3723 0.13 +0.0
4,274,266 + Rru_A3723 0.13 -0.1
4,274,266 + Rru_A3723 0.13 -1.7
4,274,267 - Rru_A3723 0.13 +0.0
4,274,267 - Rru_A3723 0.13 -1.6
4,274,504 - Rru_A3723 0.25 +0.0
4,274,504 - Rru_A3723 0.25 +0.3
4,274,504 - Rru_A3723 0.25 +0.1
4,274,737 + Rru_A3723 0.37 +0.0
4,274,737 + Rru_A3723 0.37 +0.2
4,274,737 + Rru_A3723 0.37 -1.0
4,274,737 + Rru_A3723 0.37 -1.2
4,274,737 + Rru_A3723 0.37 -0.2
4,274,738 - Rru_A3723 0.37 +0.2
4,274,738 - Rru_A3723 0.37 +0.3
4,274,739 + Rru_A3723 0.37 +0.0
4,274,739 + Rru_A3723 0.37 -1.0
4,274,740 - Rru_A3723 0.37 +0.6
4,274,740 - Rru_A3723 0.37 +0.0
4,274,794 + Rru_A3723 0.40 +0.0
4,274,794 + Rru_A3723 0.40 +0.0
4,274,794 + Rru_A3723 0.40 +0.4
4,274,795 - Rru_A3723 0.40 -0.3
4,274,867 - Rru_A3723 0.44 +0.0
4,275,031 + Rru_A3723 0.52 -0.0
4,275,032 - Rru_A3723 0.52 +1.0
4,275,032 - Rru_A3723 0.52 +0.0
4,275,032 - Rru_A3723 0.52 +0.4
4,275,032 - Rru_A3723 0.52 -0.3
4,275,057 + Rru_A3723 0.54 -1.3
4,275,094 + Rru_A3723 0.56 +0.8
4,275,095 - Rru_A3723 0.56 +0.0
4,275,095 - Rru_A3723 0.56 +0.0
4,275,097 + Rru_A3723 0.56 -0.2
4,275,097 + Rru_A3723 0.56 +0.0
4,275,097 + Rru_A3723 0.56 +2.7
4,275,097 + Rru_A3723 0.56 +1.0
4,275,098 - Rru_A3723 0.56 +0.0
4,275,098 - Rru_A3723 0.56 +0.0
4,275,220 + Rru_A3723 0.62 +0.0
4,275,221 - Rru_A3723 0.62 +0.9
4,275,232 + Rru_A3723 0.63 +1.0
4,275,232 + Rru_A3723 0.63 +1.8
4,275,232 + Rru_A3723 0.63 +0.7
4,275,233 - Rru_A3723 0.63 +0.0
4,275,233 - Rru_A3723 0.63 +0.0
4,275,233 - Rru_A3723 0.63 -0.2
4,275,233 - Rru_A3723 0.63 +1.1
4,275,583 + Rru_A3723 0.81 +0.8
4,275,583 + Rru_A3723 0.81 +1.4
4,275,583 + Rru_A3723 0.81 +0.0
4,275,583 + Rru_A3723 0.81 -1.0
4,275,583 + Rru_A3723 0.81 +0.6
4,275,584 - Rru_A3723 0.81 +0.0
4,275,584 - Rru_A3723 0.81 +0.0
4,275,584 - Rru_A3723 0.81 -1.2
4,275,584 - Rru_A3723 0.81 +0.0
4,275,584 - Rru_A3723 0.81 -1.0
4,275,584 - Rru_A3723 0.81 +0.7
4,275,634 + Rru_A3723 0.84 +0.0
4,275,635 - Rru_A3723 0.84 +0.0
4,275,745 + Rru_A3723 0.89 +0.7
4,275,745 + Rru_A3723 0.89 +0.6
4,275,745 + Rru_A3723 0.89 +0.0
4,275,746 - Rru_A3723 0.89 +1.6
4,275,746 - Rru_A3723 0.89 +0.0
4,275,950 - +0.9
4,276,216 - +1.0
4,276,216 - +0.0
4,276,252 - -1.8
4,276,434 + -1.6
4,276,434 + -1.5
4,276,435 - +0.6
4,276,435 - +0.0
4,276,435 - +0.0
4,276,435 - +0.6
4,276,951 - Rru_A3724 0.72 +0.1
4,276,951 - Rru_A3724 0.72 +0.0

Or see this region's nucleotide sequence