Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3077

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3076 and Rru_A3077 are separated by 231 nucleotidesRru_A3077 and Rru_A3078 are separated by 1 nucleotidesRru_A3078 and Rru_A3079 are separated by 42 nucleotides Rru_A3076: Rru_A3076 - Cobalamin adenosyltransferase (NCBI), at 3,542,168 to 3,542,863 _A3076 Rru_A3077: Rru_A3077 - Electron transfer flavoprotein beta-subunit (NCBI), at 3,543,095 to 3,543,844 _A3077 Rru_A3078: Rru_A3078 - Electron transfer flavoprotein (NCBI), at 3,543,846 to 3,544,781 _A3078 Rru_A3079: Rru_A3079 - 3-hydroxybutyryl-CoA dehydrogenase (NCBI), at 3,544,824 to 3,545,696 _A3079 Position (kb) 3543 3544Strain fitness (log2 ratio) -1 0 1 2 3at 3542.112 kb on - strandat 3542.190 kb on - strandat 3542.190 kb on - strandat 3542.249 kb on + strand, within Rru_A3076at 3542.249 kb on + strand, within Rru_A3076at 3542.249 kb on + strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.270 kb on + strand, within Rru_A3076at 3542.537 kb on - strand, within Rru_A3076at 3542.537 kb on - strand, within Rru_A3076at 3542.583 kb on + strand, within Rru_A3076at 3542.584 kb on - strand, within Rru_A3076at 3542.756 kb on + strand, within Rru_A3076at 3542.777 kb on + strand, within Rru_A3076at 3542.777 kb on + strand, within Rru_A3076at 3542.777 kb on + strand, within Rru_A3076at 3542.935 kb on + strandat 3542.935 kb on + strandat 3542.957 kb on + strandat 3542.957 kb on + strandat 3544.771 kb on + strandat 3544.779 kb on + strandat 3544.779 kb on + strandat 3544.779 kb on + strandat 3544.779 kb on + strandat 3544.780 kb on - strandat 3544.780 kb on - strandat 3544.780 kb on - strandat 3544.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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3,542,112 - +0.4
3,542,190 - +1.0
3,542,190 - +0.0
3,542,249 + Rru_A3076 0.12 +0.3
3,542,249 + Rru_A3076 0.12 +0.6
3,542,249 + Rru_A3076 0.12 +0.0
3,542,250 - Rru_A3076 0.12 +0.6
3,542,250 - Rru_A3076 0.12 +0.0
3,542,250 - Rru_A3076 0.12 +0.0
3,542,250 - Rru_A3076 0.12 +0.6
3,542,270 + Rru_A3076 0.15 +0.6
3,542,537 - Rru_A3076 0.53 +0.0
3,542,537 - Rru_A3076 0.53 +1.3
3,542,583 + Rru_A3076 0.60 +1.0
3,542,584 - Rru_A3076 0.60 +0.9
3,542,756 + Rru_A3076 0.84 +1.0
3,542,777 + Rru_A3076 0.88 +2.0
3,542,777 + Rru_A3076 0.88 +0.6
3,542,777 + Rru_A3076 0.88 +1.3
3,542,935 + +1.0
3,542,935 + -1.0
3,542,957 + +1.3
3,542,957 + +0.5
3,544,771 + +0.0
3,544,779 + +0.2
3,544,779 + -0.6
3,544,779 + -1.5
3,544,779 + -0.3
3,544,780 - -0.8
3,544,780 - +0.0
3,544,780 - -0.2
3,544,780 - +3.3

Or see this region's nucleotide sequence