Experiment: Succinic Acid; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3076 and Rru_A3077 are separated by 231 nucleotides Rru_A3077 and Rru_A3078 are separated by 1 nucleotides Rru_A3078 and Rru_A3079 are separated by 42 nucleotides
Rru_A3076: Rru_A3076 - Cobalamin adenosyltransferase (NCBI), at 3,542,168 to 3,542,863
_A3076
Rru_A3077: Rru_A3077 - Electron transfer flavoprotein beta-subunit (NCBI), at 3,543,095 to 3,543,844
_A3077
Rru_A3078: Rru_A3078 - Electron transfer flavoprotein (NCBI), at 3,543,846 to 3,544,781
_A3078
Rru_A3079: Rru_A3079 - 3-hydroxybutyryl-CoA dehydrogenase (NCBI), at 3,544,824 to 3,545,696
_A3079
Position (kb)
3543
3544 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3542.112 kb on - strand at 3542.190 kb on - strand at 3542.190 kb on - strand at 3542.249 kb on + strand, within Rru_A3076 at 3542.249 kb on + strand, within Rru_A3076 at 3542.249 kb on + strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.270 kb on + strand, within Rru_A3076 at 3542.537 kb on - strand, within Rru_A3076 at 3542.537 kb on - strand, within Rru_A3076 at 3542.583 kb on + strand, within Rru_A3076 at 3542.584 kb on - strand, within Rru_A3076 at 3542.756 kb on + strand, within Rru_A3076 at 3542.777 kb on + strand, within Rru_A3076 at 3542.777 kb on + strand, within Rru_A3076 at 3542.777 kb on + strand, within Rru_A3076 at 3542.935 kb on + strand at 3542.935 kb on + strand at 3542.957 kb on + strand at 3542.957 kb on + strand at 3544.771 kb on + strand at 3544.779 kb on + strand at 3544.779 kb on + strand at 3544.779 kb on + strand at 3544.779 kb on + strand at 3544.780 kb on - strand at 3544.780 kb on - strand at 3544.780 kb on - strand at 3544.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM remove 3,542,112 - +0.4 3,542,190 - +1.0 3,542,190 - +0.0 3,542,249 + Rru_A3076 0.12 +0.3 3,542,249 + Rru_A3076 0.12 +0.6 3,542,249 + Rru_A3076 0.12 +0.0 3,542,250 - Rru_A3076 0.12 +0.6 3,542,250 - Rru_A3076 0.12 +0.0 3,542,250 - Rru_A3076 0.12 +0.0 3,542,250 - Rru_A3076 0.12 +0.6 3,542,270 + Rru_A3076 0.15 +0.6 3,542,537 - Rru_A3076 0.53 +0.0 3,542,537 - Rru_A3076 0.53 +1.3 3,542,583 + Rru_A3076 0.60 +1.0 3,542,584 - Rru_A3076 0.60 +0.9 3,542,756 + Rru_A3076 0.84 +1.0 3,542,777 + Rru_A3076 0.88 +2.0 3,542,777 + Rru_A3076 0.88 +0.6 3,542,777 + Rru_A3076 0.88 +1.3 3,542,935 + +1.0 3,542,935 + -1.0 3,542,957 + +1.3 3,542,957 + +0.5 3,544,771 + +0.0 3,544,779 + +0.2 3,544,779 + -0.6 3,544,779 + -1.5 3,544,779 + -0.3 3,544,780 - -0.8 3,544,780 - +0.0 3,544,780 - -0.2 3,544,780 - +3.3
Or see this region's nucleotide sequence