Experiment: Succinic Acid; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2323 and Rru_A2324 are separated by 52 nucleotides Rru_A2324 and Rru_A2325 are separated by 35 nucleotides Rru_A2325 and Rru_A2326 are separated by 5 nucleotides
Rru_A2323: Rru_A2323 - Two component CheB methylesterase (NCBI), at 2,693,636 to 2,694,748
_A2323
Rru_A2324: Rru_A2324 - PBS lyase HEAT-like repeat (NCBI), at 2,694,801 to 2,695,349
_A2324
Rru_A2325: Rru_A2325 - MCP methyltransferase, CheR-type (NCBI), at 2,695,385 to 2,696,215
_A2325
Rru_A2326: Rru_A2326 - Response regulator receiver domain protein (CheY) (NCBI), at 2,696,221 to 2,696,619
_A2326
Position (kb)
2694
2695
2696 Strain fitness (log2 ratio)
-1
0
1
2 at 2694.028 kb on + strand, within Rru_A2323 at 2694.029 kb on - strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.357 kb on - strand, within Rru_A2323 at 2694.440 kb on + strand, within Rru_A2323 at 2694.440 kb on + strand, within Rru_A2323 at 2694.441 kb on - strand, within Rru_A2323 at 2694.441 kb on - strand, within Rru_A2323 at 2694.441 kb on - strand, within Rru_A2323 at 2694.728 kb on + strand at 2694.728 kb on + strand at 2694.728 kb on + strand at 2694.728 kb on + strand at 2694.729 kb on - strand at 2694.729 kb on - strand at 2695.196 kb on + strand, within Rru_A2324 at 2695.197 kb on - strand, within Rru_A2324 at 2695.197 kb on - strand, within Rru_A2324 at 2695.197 kb on - strand, within Rru_A2324 at 2695.431 kb on - strand at 2695.556 kb on - strand, within Rru_A2325 at 2695.610 kb on + strand, within Rru_A2325 at 2695.611 kb on - strand, within Rru_A2325 at 2695.628 kb on + strand, within Rru_A2325 at 2695.629 kb on - strand, within Rru_A2325 at 2695.783 kb on + strand, within Rru_A2325 at 2695.784 kb on - strand, within Rru_A2325 at 2695.784 kb on - strand, within Rru_A2325 at 2695.902 kb on - strand, within Rru_A2325 at 2695.928 kb on + strand, within Rru_A2325 at 2695.928 kb on + strand, within Rru_A2325 at 2695.929 kb on - strand, within Rru_A2325 at 2696.161 kb on - strand at 2696.196 kb on - strand at 2696.280 kb on - strand, within Rru_A2326 at 2696.280 kb on - strand, within Rru_A2326 at 2696.280 kb on - strand, within Rru_A2326
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM remove 2,694,028 + Rru_A2323 0.35 -0.0 2,694,029 - Rru_A2323 0.35 -0.5 2,694,297 + Rru_A2323 0.59 +0.0 2,694,297 + Rru_A2323 0.59 +1.9 2,694,297 + Rru_A2323 0.59 -0.0 2,694,297 + Rru_A2323 0.59 -0.4 2,694,297 + Rru_A2323 0.59 -0.0 2,694,297 + Rru_A2323 0.59 +0.1 2,694,298 - Rru_A2323 0.59 -0.0 2,694,298 - Rru_A2323 0.59 +0.4 2,694,298 - Rru_A2323 0.59 +0.5 2,694,298 - Rru_A2323 0.59 +0.5 2,694,298 - Rru_A2323 0.59 -0.0 2,694,298 - Rru_A2323 0.59 -0.6 2,694,298 - Rru_A2323 0.59 +2.0 2,694,298 - Rru_A2323 0.59 +0.5 2,694,357 - Rru_A2323 0.65 +2.0 2,694,440 + Rru_A2323 0.72 -1.4 2,694,440 + Rru_A2323 0.72 -0.0 2,694,441 - Rru_A2323 0.72 +0.7 2,694,441 - Rru_A2323 0.72 -0.0 2,694,441 - Rru_A2323 0.72 -0.0 2,694,728 + -0.0 2,694,728 + +0.6 2,694,728 + -0.0 2,694,728 + +0.3 2,694,729 - +1.0 2,694,729 - -0.0 2,695,196 + Rru_A2324 0.72 -0.0 2,695,197 - Rru_A2324 0.72 +0.7 2,695,197 - Rru_A2324 0.72 -0.2 2,695,197 - Rru_A2324 0.72 -0.0 2,695,431 - +1.2 2,695,556 - Rru_A2325 0.21 -1.0 2,695,610 + Rru_A2325 0.27 +0.2 2,695,611 - Rru_A2325 0.27 -0.0 2,695,628 + Rru_A2325 0.29 -0.0 2,695,629 - Rru_A2325 0.29 -0.0 2,695,783 + Rru_A2325 0.48 +0.9 2,695,784 - Rru_A2325 0.48 +1.0 2,695,784 - Rru_A2325 0.48 +0.5 2,695,902 - Rru_A2325 0.62 -0.5 2,695,928 + Rru_A2325 0.65 -0.0 2,695,928 + Rru_A2325 0.65 +0.6 2,695,929 - Rru_A2325 0.65 -0.3 2,696,161 - -0.0 2,696,196 - +1.6 2,696,280 - Rru_A2326 0.15 -0.0 2,696,280 - Rru_A2326 0.15 +0.6 2,696,280 - Rru_A2326 0.15 +1.0
Or see this region's nucleotide sequence