Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2217

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2215 and Rru_A2216 are separated by 145 nucleotidesRru_A2216 and Rru_A2217 are separated by 129 nucleotidesRru_A2217 and Rru_A2218 are separated by 159 nucleotides Rru_A2215: Rru_A2215 - Transcriptional Regulator, LysR family (NCBI), at 2,574,265 to 2,575,218 _A2215 Rru_A2216: Rru_A2216 - Protein of unknown function DUF1127 (NCBI), at 2,575,364 to 2,575,714 _A2216 Rru_A2217: Rru_A2217 - hypothetical protein (NCBI), at 2,575,844 to 2,576,596 _A2217 Rru_A2218: Rru_A2218 - Short-chain dehydrogenase/reductase SDR (NCBI), at 2,576,756 to 2,577,562 _A2218 Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -1 0 1 2 3at 2575.013 kb on + strand, within Rru_A2215at 2575.013 kb on + strand, within Rru_A2215at 2575.013 kb on + strand, within Rru_A2215at 2575.014 kb on - strand, within Rru_A2215at 2575.014 kb on - strand, within Rru_A2215at 2575.014 kb on - strand, within Rru_A2215at 2575.150 kb on - strandat 2575.308 kb on - strandat 2575.308 kb on - strandat 2575.308 kb on - strandat 2575.442 kb on + strand, within Rru_A2216at 2575.562 kb on + strand, within Rru_A2216at 2575.563 kb on - strand, within Rru_A2216at 2575.563 kb on - strand, within Rru_A2216at 2575.812 kb on + strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2575.813 kb on - strandat 2576.491 kb on - strand, within Rru_A2217at 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2576.717 kb on + strandat 2577.560 kb on + strandat 2577.560 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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2,575,013 + Rru_A2215 0.78 -0.0
2,575,013 + Rru_A2215 0.78 -1.0
2,575,013 + Rru_A2215 0.78 +1.2
2,575,014 - Rru_A2215 0.79 +3.0
2,575,014 - Rru_A2215 0.79 -0.4
2,575,014 - Rru_A2215 0.79 -0.0
2,575,150 - -0.0
2,575,308 - +0.7
2,575,308 - +0.6
2,575,308 - +0.3
2,575,442 + Rru_A2216 0.22 +2.1
2,575,562 + Rru_A2216 0.56 +0.8
2,575,563 - Rru_A2216 0.57 +1.8
2,575,563 - Rru_A2216 0.57 +0.5
2,575,812 + +1.1
2,575,813 - -0.0
2,575,813 - -0.0
2,575,813 - +0.9
2,575,813 - +3.4
2,575,813 - +0.5
2,576,491 - Rru_A2217 0.86 -0.0
2,576,717 + +2.0
2,576,717 + -0.0
2,576,717 + -0.3
2,576,717 + +1.5
2,576,717 + -0.0
2,576,717 + +2.5
2,577,560 + -1.1
2,577,560 + +1.4

Or see this region's nucleotide sequence