Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1757

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1755 and Rru_A1756 are separated by 17 nucleotidesRru_A1756 and Rru_A1757 are separated by 189 nucleotidesRru_A1757 and Rru_A1758 are separated by 328 nucleotidesRru_A1758 and Rru_A1759 are separated by 210 nucleotides Rru_A1755: Rru_A1755 - hypothetical protein (NCBI), at 2,049,074 to 2,049,508 _A1755 Rru_A1756: Rru_A1756 - hypothetical protein (NCBI), at 2,049,526 to 2,049,945 _A1756 Rru_A1757: Rru_A1757 - Gid protein (NCBI), at 2,050,135 to 2,051,583 _A1757 Rru_A1758: Rru_A1758 - hypothetical protein (NCBI), at 2,051,912 to 2,052,130 _A1758 Rru_A1759: Rru_A1759 - putative phytoene synthase protein (NCBI), at 2,052,341 to 2,053,189 _A1759 Position (kb) 2050 2051 2052Strain fitness (log2 ratio) -2 -1 0 1 2at 2050.094 kb on - strandat 2050.099 kb on + strandat 2050.100 kb on - strandat 2050.100 kb on - strandat 2050.255 kb on - strandat 2050.255 kb on - strandat 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.328 kb on - strand, within Rru_A1757at 2050.328 kb on - strand, within Rru_A1757at 2050.329 kb on + strand, within Rru_A1757at 2050.329 kb on + strand, within Rru_A1757at 2050.330 kb on - strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.717 kb on + strand, within Rru_A1757at 2050.718 kb on - strand, within Rru_A1757at 2050.718 kb on - strand, within Rru_A1757at 2050.718 kb on - strand, within Rru_A1757at 2050.747 kb on + strand, within Rru_A1757at 2050.748 kb on - strand, within Rru_A1757at 2050.748 kb on - strand, within Rru_A1757at 2050.748 kb on - strand, within Rru_A1757at 2050.816 kb on + strand, within Rru_A1757at 2050.978 kb on + strand, within Rru_A1757at 2050.979 kb on - strand, within Rru_A1757at 2050.979 kb on - strand, within Rru_A1757at 2050.979 kb on - strand, within Rru_A1757at 2050.979 kb on - strand, within Rru_A1757at 2051.094 kb on + strand, within Rru_A1757at 2051.094 kb on + strand, within Rru_A1757at 2051.094 kb on + strand, within Rru_A1757at 2051.094 kb on + strand, within Rru_A1757at 2051.095 kb on - strand, within Rru_A1757at 2051.095 kb on - strand, within Rru_A1757at 2051.095 kb on - strand, within Rru_A1757at 2051.191 kb on + strand, within Rru_A1757at 2051.191 kb on + strand, within Rru_A1757at 2051.191 kb on + strand, within Rru_A1757at 2051.192 kb on - strand, within Rru_A1757at 2051.192 kb on - strand, within Rru_A1757at 2051.192 kb on - strand, within Rru_A1757at 2051.310 kb on + strand, within Rru_A1757at 2051.311 kb on - strand, within Rru_A1757at 2051.658 kb on + strandat 2051.782 kb on + strandat 2051.783 kb on - strandat 2051.783 kb on - strandat 2051.783 kb on - strandat 2051.868 kb on - strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.892 kb on - strandat 2051.892 kb on - strandat 2052.082 kb on + strand, within Rru_A1758at 2052.098 kb on - strand, within Rru_A1758at 2052.098 kb on - strand, within Rru_A1758at 2052.222 kb on - strandat 2052.279 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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2,050,094 - -1.1
2,050,099 + +0.2
2,050,100 - -0.1
2,050,100 - -0.1
2,050,255 - -0.1
2,050,255 - -0.1
2,050,327 + Rru_A1757 0.13 -0.6
2,050,327 + Rru_A1757 0.13 +0.1
2,050,327 + Rru_A1757 0.13 +0.9
2,050,327 + Rru_A1757 0.13 -0.3
2,050,327 + Rru_A1757 0.13 +2.0
2,050,327 + Rru_A1757 0.13 -1.1
2,050,327 + Rru_A1757 0.13 +0.3
2,050,328 - Rru_A1757 0.13 +2.2
2,050,328 - Rru_A1757 0.13 +1.9
2,050,329 + Rru_A1757 0.13 +1.4
2,050,329 + Rru_A1757 0.13 -0.1
2,050,330 - Rru_A1757 0.13 -0.8
2,050,717 + Rru_A1757 0.40 -0.1
2,050,717 + Rru_A1757 0.40 +0.6
2,050,717 + Rru_A1757 0.40 +0.9
2,050,717 + Rru_A1757 0.40 -0.1
2,050,717 + Rru_A1757 0.40 -1.1
2,050,717 + Rru_A1757 0.40 +0.1
2,050,717 + Rru_A1757 0.40 -0.1
2,050,717 + Rru_A1757 0.40 +0.9
2,050,717 + Rru_A1757 0.40 +0.6
2,050,717 + Rru_A1757 0.40 +1.0
2,050,717 + Rru_A1757 0.40 -0.5
2,050,718 - Rru_A1757 0.40 +0.9
2,050,718 - Rru_A1757 0.40 -0.1
2,050,718 - Rru_A1757 0.40 +0.4
2,050,747 + Rru_A1757 0.42 -0.8
2,050,748 - Rru_A1757 0.42 -0.1
2,050,748 - Rru_A1757 0.42 +0.9
2,050,748 - Rru_A1757 0.42 -0.1
2,050,816 + Rru_A1757 0.47 -0.1
2,050,978 + Rru_A1757 0.58 -0.1
2,050,979 - Rru_A1757 0.58 -1.1
2,050,979 - Rru_A1757 0.58 -1.2
2,050,979 - Rru_A1757 0.58 +1.9
2,050,979 - Rru_A1757 0.58 -1.7
2,051,094 + Rru_A1757 0.66 -0.1
2,051,094 + Rru_A1757 0.66 +0.6
2,051,094 + Rru_A1757 0.66 -0.0
2,051,094 + Rru_A1757 0.66 +0.7
2,051,095 - Rru_A1757 0.66 -0.1
2,051,095 - Rru_A1757 0.66 +0.6
2,051,095 - Rru_A1757 0.66 -0.3
2,051,191 + Rru_A1757 0.73 -0.4
2,051,191 + Rru_A1757 0.73 -0.1
2,051,191 + Rru_A1757 0.73 +0.1
2,051,192 - Rru_A1757 0.73 +0.2
2,051,192 - Rru_A1757 0.73 +2.1
2,051,192 - Rru_A1757 0.73 -1.1
2,051,310 + Rru_A1757 0.81 -0.1
2,051,311 - Rru_A1757 0.81 -0.1
2,051,658 + -0.1
2,051,782 + +1.5
2,051,783 - -0.1
2,051,783 - +1.5
2,051,783 - +0.7
2,051,868 - -1.9
2,051,891 + +0.2
2,051,891 + -0.7
2,051,891 + -0.1
2,051,891 + +1.0
2,051,891 + -1.4
2,051,891 + +0.8
2,051,891 + -0.1
2,051,892 - +0.5
2,051,892 - -0.6
2,052,082 + Rru_A1758 0.78 -0.5
2,052,098 - Rru_A1758 0.85 +0.1
2,052,098 - Rru_A1758 0.85 +0.5
2,052,222 - -0.1
2,052,279 + -0.1

Or see this region's nucleotide sequence