Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1726

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1724 and Rru_A1725 are separated by 38 nucleotidesRru_A1725 and Rru_A1726 are separated by 117 nucleotidesRru_A1726 and Rru_A1727 are separated by 4 nucleotidesRru_A1727 and Rru_A1728 are separated by 164 nucleotides Rru_A1724: Rru_A1724 - ThiJ/PfpI (NCBI), at 2,017,171 to 2,017,848 _A1724 Rru_A1725: Rru_A1725 - Carbonate dehydratase (NCBI), at 2,017,887 to 2,018,666 _A1725 Rru_A1726: Rru_A1726 - Transcription-repair coupling factor (NCBI), at 2,018,784 to 2,022,317 _A1726 Rru_A1727: Rru_A1727 - Protein of unknown function DUF339 (NCBI), at 2,022,322 to 2,022,588 _A1727 Rru_A1728: Rru_A1728 - ATP-dependent DNA helicase RecG (NCBI), at 2,022,753 to 2,024,864 _A1728 Position (kb) 2018 2019 2020 2021 2022 2023Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2017.847 kb on - strandat 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.062 kb on + strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.063 kb on - strand, within Rru_A1725at 2018.071 kb on + strand, within Rru_A1725at 2018.072 kb on - strand, within Rru_A1725at 2018.308 kb on + strand, within Rru_A1725at 2018.309 kb on - strand, within Rru_A1725at 2018.309 kb on - strand, within Rru_A1725at 2018.323 kb on + strand, within Rru_A1725at 2018.324 kb on - strand, within Rru_A1725at 2018.361 kb on + strand, within Rru_A1725at 2018.362 kb on - strand, within Rru_A1725at 2018.378 kb on + strand, within Rru_A1725at 2018.379 kb on - strand, within Rru_A1725at 2018.379 kb on - strand, within Rru_A1725at 2018.388 kb on - strand, within Rru_A1725at 2018.388 kb on - strand, within Rru_A1725at 2018.417 kb on - strand, within Rru_A1725at 2018.503 kb on + strand, within Rru_A1725at 2018.503 kb on + strand, within Rru_A1725at 2018.503 kb on + strand, within Rru_A1725at 2018.504 kb on - strand, within Rru_A1725at 2018.504 kb on - strand, within Rru_A1725at 2018.504 kb on - strand, within Rru_A1725at 2018.504 kb on - strand, within Rru_A1725at 2018.551 kb on + strand, within Rru_A1725at 2018.552 kb on - strand, within Rru_A1725at 2018.552 kb on - strand, within Rru_A1725at 2018.552 kb on - strand, within Rru_A1725at 2018.667 kb on + strandat 2018.668 kb on - strandat 2019.166 kb on + strand, within Rru_A1726at 2019.199 kb on + strand, within Rru_A1726at 2019.199 kb on + strand, within Rru_A1726at 2019.319 kb on + strand, within Rru_A1726at 2019.320 kb on - strand, within Rru_A1726at 2019.320 kb on - strand, within Rru_A1726at 2019.344 kb on + strand, within Rru_A1726at 2019.389 kb on + strand, within Rru_A1726at 2019.447 kb on + strand, within Rru_A1726at 2019.447 kb on + strand, within Rru_A1726at 2019.447 kb on + strand, within Rru_A1726at 2019.447 kb on + strand, within Rru_A1726at 2019.447 kb on + strand, within Rru_A1726at 2019.447 kb on + strand, within Rru_A1726at 2019.447 kb on + strand, within Rru_A1726at 2019.448 kb on - strand, within Rru_A1726at 2019.448 kb on - strand, within Rru_A1726at 2019.448 kb on - strand, within Rru_A1726at 2019.448 kb on - strand, within Rru_A1726at 2019.448 kb on - strand, within Rru_A1726at 2019.448 kb on - strand, within Rru_A1726at 2019.448 kb on - strand, within Rru_A1726at 2019.505 kb on + strand, within Rru_A1726at 2019.505 kb on + strand, within Rru_A1726at 2019.505 kb on + strand, within Rru_A1726at 2019.506 kb on - strand, within Rru_A1726at 2019.506 kb on - strand, within Rru_A1726at 2019.512 kb on - strand, within Rru_A1726at 2019.512 kb on - strand, within Rru_A1726at 2019.512 kb on - strand, within Rru_A1726at 2019.512 kb on - strand, within Rru_A1726at 2019.553 kb on + strand, within Rru_A1726at 2019.554 kb on - strand, within Rru_A1726at 2019.576 kb on - strand, within Rru_A1726at 2019.600 kb on - strand, within Rru_A1726at 2019.600 kb on - strand, within Rru_A1726at 2019.600 kb on - strand, within Rru_A1726at 2019.659 kb on - strand, within Rru_A1726at 2019.659 kb on - strand, within Rru_A1726at 2019.659 kb on - strand, within Rru_A1726at 2019.659 kb on - strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.802 kb on + strand, within Rru_A1726at 2019.803 kb on - strand, within Rru_A1726at 2019.803 kb on - strand, within Rru_A1726at 2019.803 kb on - strand, within Rru_A1726at 2019.803 kb on - strand, within Rru_A1726at 2019.803 kb on - strand, within Rru_A1726at 2019.803 kb on - strand, within Rru_A1726at 2020.474 kb on + strand, within Rru_A1726at 2020.474 kb on + strand, within Rru_A1726at 2020.554 kb on - strand, within Rru_A1726at 2020.646 kb on - strand, within Rru_A1726at 2020.664 kb on + strand, within Rru_A1726at 2020.664 kb on + strand, within Rru_A1726at 2020.681 kb on + strand, within Rru_A1726at 2020.681 kb on + strand, within Rru_A1726at 2020.681 kb on + strand, within Rru_A1726at 2020.682 kb on - strand, within Rru_A1726at 2020.682 kb on - strand, within Rru_A1726at 2020.682 kb on - strand, within Rru_A1726at 2020.682 kb on - strand, within Rru_A1726at 2020.682 kb on - strand, within Rru_A1726at 2020.702 kb on + strand, within Rru_A1726at 2020.763 kb on - strand, within Rru_A1726at 2020.763 kb on - strand, within Rru_A1726at 2021.239 kb on + strand, within Rru_A1726at 2021.240 kb on - strand, within Rru_A1726at 2021.329 kb on + strand, within Rru_A1726at 2021.329 kb on + strand, within Rru_A1726at 2021.329 kb on + strand, within Rru_A1726at 2021.329 kb on + strand, within Rru_A1726at 2021.485 kb on + strand, within Rru_A1726at 2021.486 kb on - strand, within Rru_A1726at 2021.486 kb on - strand, within Rru_A1726at 2021.486 kb on - strand, within Rru_A1726at 2021.499 kb on - strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.573 kb on - strand, within Rru_A1726at 2021.573 kb on - strand, within Rru_A1726at 2021.796 kb on - strand, within Rru_A1726at 2021.822 kb on - strand, within Rru_A1726at 2021.857 kb on + strand, within Rru_A1726at 2021.857 kb on + strand, within Rru_A1726at 2021.858 kb on - strand, within Rru_A1726at 2022.088 kb on + strandat 2022.089 kb on - strandat 2022.089 kb on - strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.655 kb on - strandat 2022.655 kb on - strandat 2022.655 kb on - strandat 2022.656 kb on + strandat 2022.656 kb on + strandat 2022.656 kb on + strandat 2022.656 kb on + strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.659 kb on - strandat 2022.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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2,017,847 - +2.5
2,018,062 + Rru_A1725 0.22 -0.1
2,018,062 + Rru_A1725 0.22 +0.7
2,018,062 + Rru_A1725 0.22 +1.4
2,018,062 + Rru_A1725 0.22 +0.5
2,018,062 + Rru_A1725 0.22 +1.1
2,018,062 + Rru_A1725 0.22 +0.2
2,018,062 + Rru_A1725 0.22 -0.1
2,018,062 + Rru_A1725 0.22 -0.1
2,018,062 + Rru_A1725 0.22 +0.7
2,018,063 - Rru_A1725 0.23 +0.7
2,018,063 - Rru_A1725 0.23 -2.1
2,018,063 - Rru_A1725 0.23 -0.2
2,018,063 - Rru_A1725 0.23 +0.2
2,018,063 - Rru_A1725 0.23 -0.1
2,018,063 - Rru_A1725 0.23 +0.9
2,018,063 - Rru_A1725 0.23 +0.2
2,018,063 - Rru_A1725 0.23 -0.1
2,018,063 - Rru_A1725 0.23 -0.1
2,018,071 + Rru_A1725 0.24 +0.3
2,018,072 - Rru_A1725 0.24 -0.1
2,018,308 + Rru_A1725 0.54 +0.9
2,018,309 - Rru_A1725 0.54 -0.1
2,018,309 - Rru_A1725 0.54 +2.5
2,018,323 + Rru_A1725 0.56 +1.4
2,018,324 - Rru_A1725 0.56 -0.1
2,018,361 + Rru_A1725 0.61 -0.1
2,018,362 - Rru_A1725 0.61 +1.9
2,018,378 + Rru_A1725 0.63 +1.2
2,018,379 - Rru_A1725 0.63 -0.1
2,018,379 - Rru_A1725 0.63 +0.6
2,018,388 - Rru_A1725 0.64 +0.9
2,018,388 - Rru_A1725 0.64 +0.7
2,018,417 - Rru_A1725 0.68 +0.2
2,018,503 + Rru_A1725 0.79 +0.3
2,018,503 + Rru_A1725 0.79 +1.0
2,018,503 + Rru_A1725 0.79 +0.4
2,018,504 - Rru_A1725 0.79 +1.2
2,018,504 - Rru_A1725 0.79 -0.1
2,018,504 - Rru_A1725 0.79 +0.5
2,018,504 - Rru_A1725 0.79 +0.9
2,018,551 + Rru_A1725 0.85 +1.1
2,018,552 - Rru_A1725 0.85 -0.1
2,018,552 - Rru_A1725 0.85 -1.8
2,018,552 - Rru_A1725 0.85 -0.1
2,018,667 + +0.3
2,018,668 - +1.0
2,019,166 + Rru_A1726 0.11 -0.1
2,019,199 + Rru_A1726 0.12 -0.4
2,019,199 + Rru_A1726 0.12 +1.9
2,019,319 + Rru_A1726 0.15 +1.2
2,019,320 - Rru_A1726 0.15 -0.1
2,019,320 - Rru_A1726 0.15 -0.4
2,019,344 + Rru_A1726 0.16 -0.1
2,019,389 + Rru_A1726 0.17 -0.1
2,019,447 + Rru_A1726 0.19 +0.7
2,019,447 + Rru_A1726 0.19 +0.3
2,019,447 + Rru_A1726 0.19 -0.1
2,019,447 + Rru_A1726 0.19 -0.1
2,019,447 + Rru_A1726 0.19 +0.3
2,019,447 + Rru_A1726 0.19 +0.4
2,019,447 + Rru_A1726 0.19 +0.6
2,019,448 - Rru_A1726 0.19 +0.7
2,019,448 - Rru_A1726 0.19 -0.1
2,019,448 - Rru_A1726 0.19 -0.8
2,019,448 - Rru_A1726 0.19 +0.6
2,019,448 - Rru_A1726 0.19 -0.1
2,019,448 - Rru_A1726 0.19 +0.7
2,019,448 - Rru_A1726 0.19 +0.3
2,019,505 + Rru_A1726 0.20 -0.1
2,019,505 + Rru_A1726 0.20 -0.1
2,019,505 + Rru_A1726 0.20 +0.5
2,019,506 - Rru_A1726 0.20 -0.7
2,019,506 - Rru_A1726 0.20 -0.1
2,019,512 - Rru_A1726 0.21 -0.1
2,019,512 - Rru_A1726 0.21 +0.3
2,019,512 - Rru_A1726 0.21 -0.1
2,019,512 - Rru_A1726 0.21 +0.3
2,019,553 + Rru_A1726 0.22 -1.1
2,019,554 - Rru_A1726 0.22 +1.9
2,019,576 - Rru_A1726 0.22 -0.1
2,019,600 - Rru_A1726 0.23 -1.1
2,019,600 - Rru_A1726 0.23 -0.5
2,019,600 - Rru_A1726 0.23 -0.4
2,019,659 - Rru_A1726 0.25 -1.4
2,019,659 - Rru_A1726 0.25 -0.1
2,019,659 - Rru_A1726 0.25 -0.1
2,019,659 - Rru_A1726 0.25 -1.2
2,019,802 + Rru_A1726 0.29 +0.4
2,019,802 + Rru_A1726 0.29 -0.1
2,019,802 + Rru_A1726 0.29 +1.5
2,019,802 + Rru_A1726 0.29 -0.4
2,019,802 + Rru_A1726 0.29 -0.8
2,019,802 + Rru_A1726 0.29 -0.1
2,019,802 + Rru_A1726 0.29 -0.1
2,019,802 + Rru_A1726 0.29 -1.1
2,019,803 - Rru_A1726 0.29 -0.7
2,019,803 - Rru_A1726 0.29 +0.6
2,019,803 - Rru_A1726 0.29 -2.4
2,019,803 - Rru_A1726 0.29 -0.6
2,019,803 - Rru_A1726 0.29 +0.5
2,019,803 - Rru_A1726 0.29 +0.5
2,020,474 + Rru_A1726 0.48 +0.2
2,020,474 + Rru_A1726 0.48 -0.6
2,020,554 - Rru_A1726 0.50 -0.5
2,020,646 - Rru_A1726 0.53 -0.1
2,020,664 + Rru_A1726 0.53 -0.1
2,020,664 + Rru_A1726 0.53 -0.7
2,020,681 + Rru_A1726 0.54 +1.7
2,020,681 + Rru_A1726 0.54 -1.7
2,020,681 + Rru_A1726 0.54 +2.9
2,020,682 - Rru_A1726 0.54 -0.1
2,020,682 - Rru_A1726 0.54 -0.1
2,020,682 - Rru_A1726 0.54 -0.1
2,020,682 - Rru_A1726 0.54 -0.6
2,020,682 - Rru_A1726 0.54 -0.1
2,020,702 + Rru_A1726 0.54 +0.0
2,020,763 - Rru_A1726 0.56 +0.4
2,020,763 - Rru_A1726 0.56 -0.1
2,021,239 + Rru_A1726 0.69 -0.1
2,021,240 - Rru_A1726 0.69 -0.1
2,021,329 + Rru_A1726 0.72 +0.3
2,021,329 + Rru_A1726 0.72 -0.5
2,021,329 + Rru_A1726 0.72 +2.2
2,021,329 + Rru_A1726 0.72 -0.6
2,021,485 + Rru_A1726 0.76 +0.9
2,021,486 - Rru_A1726 0.76 +0.5
2,021,486 - Rru_A1726 0.76 +0.9
2,021,486 - Rru_A1726 0.76 -0.1
2,021,499 - Rru_A1726 0.77 +1.4
2,021,572 + Rru_A1726 0.79 -1.1
2,021,572 + Rru_A1726 0.79 +0.0
2,021,572 + Rru_A1726 0.79 +0.9
2,021,572 + Rru_A1726 0.79 -0.1
2,021,573 - Rru_A1726 0.79 -0.1
2,021,573 - Rru_A1726 0.79 -0.1
2,021,796 - Rru_A1726 0.85 +0.6
2,021,822 - Rru_A1726 0.86 -1.1
2,021,857 + Rru_A1726 0.87 +0.5
2,021,857 + Rru_A1726 0.87 -0.1
2,021,858 - Rru_A1726 0.87 -0.1
2,022,088 + +1.8
2,022,089 - +0.7
2,022,089 - -0.1
2,022,654 + -1.1
2,022,654 + +0.9
2,022,654 + -0.1
2,022,654 + -1.7
2,022,654 + -0.1
2,022,654 + -0.1
2,022,655 - +0.4
2,022,655 - -0.1
2,022,655 - -0.1
2,022,656 + -0.1
2,022,656 + -0.1
2,022,656 + -0.1
2,022,656 + -1.1
2,022,657 - +1.4
2,022,657 - -0.2
2,022,657 - -0.1
2,022,657 - -0.1
2,022,657 - -1.1
2,022,658 + -1.1
2,022,658 + -0.1
2,022,658 + -1.1
2,022,658 + +1.1
2,022,659 - -0.1
2,022,659 - -0.3

Or see this region's nucleotide sequence