Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1340

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1339 and Rru_A1340 are separated by 542 nucleotidesRru_A1340 and Rru_A1341 overlap by 4 nucleotides Rru_A1339: Rru_A1339 - Transcriptional Regulator, DeoR family (NCBI), at 1,576,275 to 1,577,366 _A1339 Rru_A1340: Rru_A1340 - Glycerone kinase (NCBI), at 1,577,909 to 1,578,913 _A1340 Rru_A1341: Rru_A1341 - Dak phosphatase (NCBI), at 1,578,910 to 1,579,551 _A1341 Position (kb) 1577 1578 1579Strain fitness (log2 ratio) -1 0 1 2 3at 1576.957 kb on + strand, within Rru_A1339at 1576.958 kb on - strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.729 kb on + strandat 1577.730 kb on - strandat 1577.730 kb on - strandat 1577.730 kb on - strandat 1577.905 kb on - strandat 1577.905 kb on - strandat 1577.943 kb on + strandat 1577.943 kb on + strandat 1578.228 kb on - strand, within Rru_A1340at 1578.241 kb on + strand, within Rru_A1340at 1578.241 kb on + strand, within Rru_A1340at 1578.241 kb on + strand, within Rru_A1340at 1578.242 kb on - strand, within Rru_A1340at 1578.242 kb on - strand, within Rru_A1340at 1578.242 kb on - strand, within Rru_A1340at 1578.242 kb on - strand, within Rru_A1340at 1578.242 kb on - strand, within Rru_A1340at 1578.497 kb on - strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.719 kb on + strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.720 kb on - strand, within Rru_A1340at 1578.721 kb on + strand, within Rru_A1340at 1578.722 kb on - strand, within Rru_A1340at 1578.722 kb on - strand, within Rru_A1340at 1578.722 kb on - strand, within Rru_A1340at 1578.722 kb on - strand, within Rru_A1340at 1578.722 kb on - strand, within Rru_A1340at 1578.722 kb on - strand, within Rru_A1340at 1578.722 kb on - strand, within Rru_A1340at 1578.729 kb on - strand, within Rru_A1340at 1578.794 kb on + strand, within Rru_A1340at 1578.895 kb on + strandat 1578.895 kb on + strandat 1578.896 kb on - strandat 1578.896 kb on - strandat 1578.918 kb on + strandat 1579.035 kb on + strand, within Rru_A1341at 1579.036 kb on - strand, within Rru_A1341at 1579.036 kb on - strand, within Rru_A1341at 1579.036 kb on - strand, within Rru_A1341at 1579.036 kb on - strand, within Rru_A1341at 1579.036 kb on - strand, within Rru_A1341at 1579.036 kb on - strand, within Rru_A1341at 1579.036 kb on - strand, within Rru_A1341at 1579.159 kb on + strand, within Rru_A1341at 1579.159 kb on + strand, within Rru_A1341at 1579.160 kb on - strand, within Rru_A1341at 1579.160 kb on - strand, within Rru_A1341at 1579.225 kb on + strand, within Rru_A1341at 1579.226 kb on - strand, within Rru_A1341at 1579.226 kb on - strand, within Rru_A1341at 1579.226 kb on - strand, within Rru_A1341at 1579.226 kb on - strand, within Rru_A1341at 1579.226 kb on - strand, within Rru_A1341at 1579.720 kb on - strandat 1579.769 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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1,576,957 + Rru_A1339 0.62 -0.0
1,576,958 - Rru_A1339 0.63 -0.0
1,577,209 + Rru_A1339 0.86 -0.0
1,577,209 + Rru_A1339 0.86 -0.0
1,577,209 + Rru_A1339 0.86 -0.0
1,577,209 + Rru_A1339 0.86 -1.0
1,577,209 + Rru_A1339 0.86 -0.0
1,577,729 + -0.1
1,577,730 - -0.0
1,577,730 - +1.8
1,577,730 - +0.8
1,577,905 - +0.0
1,577,905 - -0.3
1,577,943 + +0.3
1,577,943 + -0.0
1,578,228 - Rru_A1340 0.32 +0.6
1,578,241 + Rru_A1340 0.33 +0.9
1,578,241 + Rru_A1340 0.33 +1.7
1,578,241 + Rru_A1340 0.33 +0.3
1,578,242 - Rru_A1340 0.33 -1.0
1,578,242 - Rru_A1340 0.33 -0.9
1,578,242 - Rru_A1340 0.33 +0.7
1,578,242 - Rru_A1340 0.33 -0.0
1,578,242 - Rru_A1340 0.33 +0.4
1,578,497 - Rru_A1340 0.59 +1.6
1,578,719 + Rru_A1340 0.81 +1.6
1,578,719 + Rru_A1340 0.81 -0.0
1,578,719 + Rru_A1340 0.81 -1.0
1,578,719 + Rru_A1340 0.81 -1.4
1,578,719 + Rru_A1340 0.81 +0.6
1,578,719 + Rru_A1340 0.81 -0.0
1,578,719 + Rru_A1340 0.81 +1.5
1,578,719 + Rru_A1340 0.81 +1.0
1,578,719 + Rru_A1340 0.81 -1.0
1,578,719 + Rru_A1340 0.81 +0.5
1,578,719 + Rru_A1340 0.81 +0.8
1,578,719 + Rru_A1340 0.81 +1.0
1,578,720 - Rru_A1340 0.81 +0.5
1,578,720 - Rru_A1340 0.81 +0.7
1,578,720 - Rru_A1340 0.81 -0.5
1,578,720 - Rru_A1340 0.81 +1.0
1,578,720 - Rru_A1340 0.81 +0.3
1,578,720 - Rru_A1340 0.81 -0.0
1,578,720 - Rru_A1340 0.81 -0.0
1,578,720 - Rru_A1340 0.81 -1.0
1,578,720 - Rru_A1340 0.81 -0.0
1,578,720 - Rru_A1340 0.81 +0.5
1,578,720 - Rru_A1340 0.81 +0.7
1,578,720 - Rru_A1340 0.81 -0.5
1,578,720 - Rru_A1340 0.81 -1.0
1,578,720 - Rru_A1340 0.81 -0.0
1,578,720 - Rru_A1340 0.81 +0.8
1,578,721 + Rru_A1340 0.81 +0.4
1,578,722 - Rru_A1340 0.81 +0.7
1,578,722 - Rru_A1340 0.81 -0.0
1,578,722 - Rru_A1340 0.81 +0.3
1,578,722 - Rru_A1340 0.81 +0.2
1,578,722 - Rru_A1340 0.81 -1.0
1,578,722 - Rru_A1340 0.81 +1.0
1,578,722 - Rru_A1340 0.81 +0.7
1,578,729 - Rru_A1340 0.82 -0.0
1,578,794 + Rru_A1340 0.88 +0.6
1,578,895 + +0.4
1,578,895 + +1.1
1,578,896 - -0.8
1,578,896 - +2.3
1,578,918 + +0.6
1,579,035 + Rru_A1341 0.19 +2.3
1,579,036 - Rru_A1341 0.20 -0.4
1,579,036 - Rru_A1341 0.20 -1.0
1,579,036 - Rru_A1341 0.20 -0.0
1,579,036 - Rru_A1341 0.20 +1.0
1,579,036 - Rru_A1341 0.20 +1.2
1,579,036 - Rru_A1341 0.20 -0.0
1,579,036 - Rru_A1341 0.20 +2.8
1,579,159 + Rru_A1341 0.39 +0.6
1,579,159 + Rru_A1341 0.39 +0.5
1,579,160 - Rru_A1341 0.39 +1.2
1,579,160 - Rru_A1341 0.39 -0.0
1,579,225 + Rru_A1341 0.49 +1.0
1,579,226 - Rru_A1341 0.49 +1.1
1,579,226 - Rru_A1341 0.49 +0.2
1,579,226 - Rru_A1341 0.49 -0.6
1,579,226 - Rru_A1341 0.49 +0.5
1,579,226 - Rru_A1341 0.49 +0.3
1,579,720 - +1.6
1,579,769 + +0.7

Or see this region's nucleotide sequence