Experiment: Succinic Acid; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1004 and Rru_A1005 are separated by 324 nucleotides Rru_A1005 and Rru_A1006 are separated by 222 nucleotides
Rru_A1004: Rru_A1004 - Lysine-arginine-ornithine-binding periplasmic protein (NCBI), at 1,190,626 to 1,191,648
_A1004
Rru_A1005: Rru_A1005 - Glycosyl transferase, family 2 (NCBI), at 1,191,973 to 1,193,007
_A1005
Rru_A1006: Rru_A1006 - Acyltransferase 3 (NCBI), at 1,193,230 to 1,194,330
_A1006
Position (kb) 1191
1192
1193
1194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1191.042 kb on - strand, within Rru_A1004 at 1191.134 kb on + strand, within Rru_A1004 at 1191.134 kb on + strand, within Rru_A1004 at 1191.135 kb on - strand, within Rru_A1004 at 1191.158 kb on + strand, within Rru_A1004 at 1191.159 kb on - strand, within Rru_A1004 at 1191.198 kb on + strand, within Rru_A1004 at 1191.199 kb on - strand, within Rru_A1004 at 1191.199 kb on - strand, within Rru_A1004 at 1191.275 kb on + strand, within Rru_A1004 at 1191.275 kb on + strand, within Rru_A1004 at 1191.275 kb on + strand, within Rru_A1004 at 1191.278 kb on + strand, within Rru_A1004 at 1191.278 kb on + strand, within Rru_A1004 at 1191.279 kb on - strand, within Rru_A1004 at 1191.459 kb on + strand, within Rru_A1004 at 1191.459 kb on + strand, within Rru_A1004 at 1191.460 kb on - strand, within Rru_A1004 at 1191.460 kb on - strand, within Rru_A1004 at 1191.655 kb on + strand at 1191.655 kb on + strand at 1191.656 kb on - strand at 1191.931 kb on + strand at 1193.251 kb on + strand at 1193.251 kb on + strand at 1193.252 kb on - strand at 1193.252 kb on - strand at 1193.353 kb on + strand, within Rru_A1006 at 1193.354 kb on - strand, within Rru_A1006 at 1193.354 kb on - strand, within Rru_A1006 at 1193.395 kb on + strand, within Rru_A1006 at 1193.395 kb on + strand, within Rru_A1006 at 1193.396 kb on - strand, within Rru_A1006 at 1193.443 kb on + strand, within Rru_A1006 at 1193.515 kb on - strand, within Rru_A1006 at 1193.533 kb on - strand, within Rru_A1006 at 1193.590 kb on + strand, within Rru_A1006 at 1193.591 kb on - strand, within Rru_A1006 at 1193.705 kb on + strand, within Rru_A1006 at 1193.706 kb on - strand, within Rru_A1006 at 1193.864 kb on + strand, within Rru_A1006 at 1193.864 kb on + strand, within Rru_A1006 at 1193.865 kb on - strand, within Rru_A1006 at 1193.923 kb on + strand, within Rru_A1006 at 1193.940 kb on + strand, within Rru_A1006 at 1193.941 kb on - strand, within Rru_A1006
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM remove 1,191,042 - Rru_A1004 0.41 +0.9 1,191,134 + Rru_A1004 0.50 -0.0 1,191,134 + Rru_A1004 0.50 +1.6 1,191,135 - Rru_A1004 0.50 +0.6 1,191,158 + Rru_A1004 0.52 -0.3 1,191,159 - Rru_A1004 0.52 -0.0 1,191,198 + Rru_A1004 0.56 +0.5 1,191,199 - Rru_A1004 0.56 -0.0 1,191,199 - Rru_A1004 0.56 -0.0 1,191,275 + Rru_A1004 0.63 -0.0 1,191,275 + Rru_A1004 0.63 +1.2 1,191,275 + Rru_A1004 0.63 -0.0 1,191,278 + Rru_A1004 0.64 +1.1 1,191,278 + Rru_A1004 0.64 -0.0 1,191,279 - Rru_A1004 0.64 +0.9 1,191,459 + Rru_A1004 0.81 -0.0 1,191,459 + Rru_A1004 0.81 +0.8 1,191,460 - Rru_A1004 0.82 -0.0 1,191,460 - Rru_A1004 0.82 +0.4 1,191,655 + +0.3 1,191,655 + -0.0 1,191,656 - -0.6 1,191,931 + +0.6 1,193,251 + +0.1 1,193,251 + +0.1 1,193,252 - -0.7 1,193,252 - -0.0 1,193,353 + Rru_A1006 0.11 +0.3 1,193,354 - Rru_A1006 0.11 -0.0 1,193,354 - Rru_A1006 0.11 -1.0 1,193,395 + Rru_A1006 0.15 -0.0 1,193,395 + Rru_A1006 0.15 +0.3 1,193,396 - Rru_A1006 0.15 -0.0 1,193,443 + Rru_A1006 0.19 +0.4 1,193,515 - Rru_A1006 0.26 -0.0 1,193,533 - Rru_A1006 0.28 +0.6 1,193,590 + Rru_A1006 0.33 +1.6 1,193,591 - Rru_A1006 0.33 +0.9 1,193,705 + Rru_A1006 0.43 +1.0 1,193,706 - Rru_A1006 0.43 -0.0 1,193,864 + Rru_A1006 0.58 +2.4 1,193,864 + Rru_A1006 0.58 +0.9 1,193,865 - Rru_A1006 0.58 -0.0 1,193,923 + Rru_A1006 0.63 -0.0 1,193,940 + Rru_A1006 0.64 -0.0 1,193,941 - Rru_A1006 0.65 -2.0
Or see this region's nucleotide sequence