Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0577

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0576 and Rru_A0577 are separated by 23 nucleotidesRru_A0577 and Rru_A0578 are separated by 234 nucleotides Rru_A0576: Rru_A0576 - chemotaxis sensory transducer (NCBI), at 683,909 to 685,975 _A0576 Rru_A0577: Rru_A0577 - hypothetical protein (NCBI), at 685,999 to 686,970 _A0577 Rru_A0578: Rru_A0578 - Metallophosphoesterase (NCBI), at 687,205 to 688,182 _A0578 Position (kb) 685 686 687Strain fitness (log2 ratio) -2 -1 0 1 2 3at 685.825 kb on - strandat 685.825 kb on - strandat 686.001 kb on - strandat 686.064 kb on + strandat 686.064 kb on + strandat 686.065 kb on - strandat 686.076 kb on + strandat 686.193 kb on - strand, within Rru_A0577at 686.409 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.420 kb on + strand, within Rru_A0577at 686.421 kb on - strand, within Rru_A0577at 686.561 kb on + strand, within Rru_A0577at 686.561 kb on + strand, within Rru_A0577at 686.561 kb on + strand, within Rru_A0577at 686.562 kb on - strand, within Rru_A0577at 686.562 kb on - strand, within Rru_A0577at 686.562 kb on - strand, within Rru_A0577at 686.905 kb on - strandat 687.011 kb on - strandat 687.193 kb on + strandat 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.436 kb on + strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.437 kb on - strand, within Rru_A0578at 687.592 kb on + strand, within Rru_A0578at 687.706 kb on + strand, within Rru_A0578at 687.706 kb on + strand, within Rru_A0578at 687.742 kb on + strand, within Rru_A0578at 687.742 kb on + strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.743 kb on - strand, within Rru_A0578at 687.762 kb on + strand, within Rru_A0578at 687.806 kb on - strand, within Rru_A0578at 687.824 kb on - strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578at 687.856 kb on + strand, within Rru_A0578

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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685,825 - -0.0
685,825 - -0.0
686,001 - -0.0
686,064 + +3.7
686,064 + -0.0
686,065 - +0.7
686,076 + +1.0
686,193 - Rru_A0577 0.20 -0.0
686,409 + Rru_A0577 0.42 +0.8
686,420 + Rru_A0577 0.43 -0.8
686,420 + Rru_A0577 0.43 +1.0
686,420 + Rru_A0577 0.43 -0.3
686,420 + Rru_A0577 0.43 +0.5
686,421 - Rru_A0577 0.43 +0.3
686,561 + Rru_A0577 0.58 -0.0
686,561 + Rru_A0577 0.58 -1.0
686,561 + Rru_A0577 0.58 +0.2
686,562 - Rru_A0577 0.58 -0.0
686,562 - Rru_A0577 0.58 -0.0
686,562 - Rru_A0577 0.58 -1.6
686,905 - +0.6
687,011 - -0.0
687,193 + -0.0
687,436 + Rru_A0578 0.24 -0.0
687,436 + Rru_A0578 0.24 -0.3
687,436 + Rru_A0578 0.24 -0.2
687,436 + Rru_A0578 0.24 -0.0
687,437 - Rru_A0578 0.24 +0.3
687,437 - Rru_A0578 0.24 -0.0
687,437 - Rru_A0578 0.24 +1.0
687,437 - Rru_A0578 0.24 -2.4
687,592 + Rru_A0578 0.40 -0.2
687,706 + Rru_A0578 0.51 +0.4
687,706 + Rru_A0578 0.51 +1.8
687,742 + Rru_A0578 0.55 -0.0
687,742 + Rru_A0578 0.55 +0.5
687,743 - Rru_A0578 0.55 +0.8
687,743 - Rru_A0578 0.55 -0.0
687,743 - Rru_A0578 0.55 -0.0
687,762 + Rru_A0578 0.57 -0.0
687,806 - Rru_A0578 0.61 -0.3
687,824 - Rru_A0578 0.63 -0.8
687,856 + Rru_A0578 0.67 +1.2
687,856 + Rru_A0578 0.67 -0.0
687,856 + Rru_A0578 0.67 -0.0
687,856 + Rru_A0578 0.67 +0.8

Or see this region's nucleotide sequence