Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0385

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0384 and Rru_A0385 are separated by 305 nucleotidesRru_A0385 and Rru_A0386 are separated by 57 nucleotidesRru_A0386 and Rru_A0387 are separated by 75 nucleotides Rru_A0384: Rru_A0384 - NADPH-quinone reductase (NCBI), at 461,217 to 462,236 _A0384 Rru_A0385: Rru_A0385 - Gamma-glutamyltransferase (NCBI), at 462,542 to 464,272 _A0385 Rru_A0386: Rru_A0386 - Transcriptional Regulator, ArsR family (NCBI), at 464,330 to 465,022 _A0386 Rru_A0387: Rru_A0387 - Antibiotic biosynthesis monooxygenase (NCBI), at 465,098 to 465,487 _A0387 Position (kb) 462 463 464 465Strain fitness (log2 ratio) -2 -1 0 1 2at 461.553 kb on + strand, within Rru_A0384at 461.562 kb on + strand, within Rru_A0384at 461.562 kb on + strand, within Rru_A0384at 461.562 kb on + strand, within Rru_A0384at 461.562 kb on + strand, within Rru_A0384at 461.562 kb on + strand, within Rru_A0384at 461.563 kb on - strand, within Rru_A0384at 461.563 kb on - strand, within Rru_A0384at 461.883 kb on + strand, within Rru_A0384at 461.884 kb on - strand, within Rru_A0384at 461.884 kb on - strand, within Rru_A0384at 462.146 kb on + strandat 462.146 kb on + strandat 462.146 kb on + strandat 462.147 kb on - strandat 462.147 kb on - strandat 462.154 kb on - strandat 462.213 kb on - strandat 462.213 kb on - strandat 462.213 kb on - strandat 462.328 kb on + strandat 462.414 kb on + strandat 462.415 kb on - strandat 462.415 kb on - strandat 462.415 kb on - strandat 462.415 kb on - strandat 462.800 kb on - strand, within Rru_A0385at 462.944 kb on + strand, within Rru_A0385at 463.254 kb on - strand, within Rru_A0385at 463.254 kb on - strand, within Rru_A0385at 463.290 kb on + strand, within Rru_A0385at 463.309 kb on + strand, within Rru_A0385at 463.309 kb on + strand, within Rru_A0385at 463.310 kb on - strand, within Rru_A0385at 463.310 kb on - strand, within Rru_A0385at 463.310 kb on - strand, within Rru_A0385at 463.310 kb on - strand, within Rru_A0385at 463.334 kb on + strand, within Rru_A0385at 463.334 kb on + strand, within Rru_A0385at 463.335 kb on - strand, within Rru_A0385at 463.335 kb on - strand, within Rru_A0385at 463.379 kb on + strand, within Rru_A0385at 463.447 kb on - strand, within Rru_A0385at 463.544 kb on + strand, within Rru_A0385at 463.545 kb on - strand, within Rru_A0385at 463.545 kb on - strand, within Rru_A0385at 463.602 kb on - strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.749 kb on - strand, within Rru_A0385at 463.749 kb on - strand, within Rru_A0385at 463.749 kb on - strand, within Rru_A0385at 463.751 kb on - strand, within Rru_A0385at 463.751 kb on - strand, within Rru_A0385at 463.751 kb on - strand, within Rru_A0385at 463.766 kb on + strand, within Rru_A0385at 463.767 kb on - strand, within Rru_A0385at 464.123 kb on - strandat 464.152 kb on + strandat 464.152 kb on + strandat 464.164 kb on - strandat 464.222 kb on + strandat 464.222 kb on + strandat 464.268 kb on - strandat 464.622 kb on + strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.894 kb on + strand, within Rru_A0386at 464.895 kb on - strand, within Rru_A0386at 464.959 kb on + strandat 464.960 kb on - strandat 464.960 kb on - strandat 464.960 kb on - strandat 465.022 kb on + strandat 465.034 kb on - strandat 465.064 kb on - strandat 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.260 kb on + strand, within Rru_A0387

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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461,553 + Rru_A0384 0.33 +0.0
461,562 + Rru_A0384 0.34 +1.0
461,562 + Rru_A0384 0.34 +1.2
461,562 + Rru_A0384 0.34 +0.5
461,562 + Rru_A0384 0.34 +0.0
461,562 + Rru_A0384 0.34 +0.0
461,563 - Rru_A0384 0.34 +0.6
461,563 - Rru_A0384 0.34 +0.0
461,883 + Rru_A0384 0.65 +0.3
461,884 - Rru_A0384 0.65 -0.3
461,884 - Rru_A0384 0.65 -0.0
462,146 + +0.0
462,146 + +1.0
462,146 + +0.3
462,147 - +1.6
462,147 - +0.0
462,154 - +0.0
462,213 - -0.8
462,213 - -0.2
462,213 - +0.0
462,328 + +0.5
462,414 + +2.1
462,415 - +0.0
462,415 - +0.8
462,415 - -0.1
462,415 - +2.0
462,800 - Rru_A0385 0.15 +0.9
462,944 + Rru_A0385 0.23 +0.0
463,254 - Rru_A0385 0.41 +0.0
463,254 - Rru_A0385 0.41 -0.7
463,290 + Rru_A0385 0.43 +0.7
463,309 + Rru_A0385 0.44 +0.0
463,309 + Rru_A0385 0.44 +0.0
463,310 - Rru_A0385 0.44 +0.0
463,310 - Rru_A0385 0.44 +0.0
463,310 - Rru_A0385 0.44 -1.0
463,310 - Rru_A0385 0.44 +0.0
463,334 + Rru_A0385 0.46 +0.8
463,334 + Rru_A0385 0.46 -0.1
463,335 - Rru_A0385 0.46 +0.0
463,335 - Rru_A0385 0.46 +0.6
463,379 + Rru_A0385 0.48 +0.4
463,447 - Rru_A0385 0.52 -1.0
463,544 + Rru_A0385 0.58 +0.0
463,545 - Rru_A0385 0.58 +0.7
463,545 - Rru_A0385 0.58 +0.0
463,602 - Rru_A0385 0.61 -0.2
463,748 + Rru_A0385 0.70 -0.0
463,748 + Rru_A0385 0.70 +1.0
463,748 + Rru_A0385 0.70 +0.0
463,748 + Rru_A0385 0.70 +0.4
463,748 + Rru_A0385 0.70 +0.0
463,749 - Rru_A0385 0.70 +0.5
463,749 - Rru_A0385 0.70 -0.0
463,749 - Rru_A0385 0.70 +0.7
463,751 - Rru_A0385 0.70 -0.9
463,751 - Rru_A0385 0.70 -1.9
463,751 - Rru_A0385 0.70 +0.6
463,766 + Rru_A0385 0.71 +0.4
463,767 - Rru_A0385 0.71 -0.0
464,123 - -0.1
464,152 + +0.6
464,152 + -0.2
464,164 - +0.0
464,222 + -1.0
464,222 + +0.0
464,268 - +0.8
464,622 + Rru_A0386 0.42 +0.0
464,623 - Rru_A0386 0.42 +0.3
464,623 - Rru_A0386 0.42 -0.1
464,682 + Rru_A0386 0.51 +0.0
464,682 + Rru_A0386 0.51 +0.1
464,682 + Rru_A0386 0.51 +0.6
464,682 + Rru_A0386 0.51 +1.0
464,682 + Rru_A0386 0.51 +0.0
464,682 + Rru_A0386 0.51 +1.3
464,682 + Rru_A0386 0.51 -0.1
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 -1.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +0.0
464,683 - Rru_A0386 0.51 +1.4
464,683 - Rru_A0386 0.51 +0.9
464,683 - Rru_A0386 0.51 +0.3
464,683 - Rru_A0386 0.51 +0.8
464,683 - Rru_A0386 0.51 +0.4
464,811 + Rru_A0386 0.69 +0.0
464,811 + Rru_A0386 0.69 +1.0
464,811 + Rru_A0386 0.69 +0.0
464,812 - Rru_A0386 0.70 -0.4
464,812 - Rru_A0386 0.70 +0.5
464,812 - Rru_A0386 0.70 +0.1
464,812 - Rru_A0386 0.70 +0.0
464,812 - Rru_A0386 0.70 +1.0
464,867 + Rru_A0386 0.77 +0.0
464,867 + Rru_A0386 0.77 +0.0
464,867 + Rru_A0386 0.77 +0.0
464,868 - Rru_A0386 0.78 +0.6
464,868 - Rru_A0386 0.78 +0.2
464,868 - Rru_A0386 0.78 -0.8
464,868 - Rru_A0386 0.78 +0.0
464,894 + Rru_A0386 0.81 +0.0
464,895 - Rru_A0386 0.82 +1.7
464,959 + +0.0
464,960 - +0.7
464,960 - +0.5
464,960 - +0.0
465,022 + +0.0
465,034 - +0.2
465,064 - +0.0
465,149 + Rru_A0387 0.13 +0.0
465,149 + Rru_A0387 0.13 +1.0
465,149 + Rru_A0387 0.13 +0.0
465,150 - Rru_A0387 0.13 -0.7
465,150 - Rru_A0387 0.13 -0.2
465,150 - Rru_A0387 0.13 +0.0
465,260 + Rru_A0387 0.42 +0.0

Or see this region's nucleotide sequence