Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0327

Experiment: Succinic Acid; Light intensity 75 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0326 and Rru_A0327 are separated by 134 nucleotidesRru_A0327 and Rru_A0328 are separated by 190 nucleotides Rru_A0326: Rru_A0326 - Transcriptional Regulator, NifA subfamily, Fis Family (NCBI), at 396,246 to 398,447 _A0326 Rru_A0327: Rru_A0327 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 398,582 to 400,444 _A0327 Rru_A0328: Rru_A0328 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 400,635 to 401,267 _A0328 Position (kb) 398 399 400 401Strain fitness (log2 ratio) -1 0 1 2 3at 397.878 kb on + strand, within Rru_A0326at 397.878 kb on + strand, within Rru_A0326at 397.878 kb on + strand, within Rru_A0326at 397.878 kb on + strand, within Rru_A0326at 397.879 kb on - strand, within Rru_A0326at 397.879 kb on - strand, within Rru_A0326at 397.879 kb on - strand, within Rru_A0326at 397.882 kb on - strand, within Rru_A0326at 397.882 kb on - strand, within Rru_A0326at 397.956 kb on + strand, within Rru_A0326at 397.956 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.025 kb on - strand, within Rru_A0326at 398.025 kb on - strand, within Rru_A0326at 398.034 kb on - strand, within Rru_A0326at 398.034 kb on - strand, within Rru_A0326at 398.314 kb on + strandat 398.315 kb on - strandat 398.315 kb on - strandat 398.501 kb on + strandat 399.022 kb on + strand, within Rru_A0327at 399.046 kb on + strand, within Rru_A0327at 399.047 kb on - strand, within Rru_A0327at 399.068 kb on + strand, within Rru_A0327at 399.068 kb on + strand, within Rru_A0327at 399.068 kb on + strand, within Rru_A0327at 399.069 kb on - strand, within Rru_A0327at 399.108 kb on - strand, within Rru_A0327at 399.435 kb on - strand, within Rru_A0327at 399.521 kb on + strand, within Rru_A0327at 399.521 kb on + strand, within Rru_A0327at 399.522 kb on - strand, within Rru_A0327at 399.522 kb on - strand, within Rru_A0327at 399.522 kb on - strand, within Rru_A0327at 399.742 kb on + strand, within Rru_A0327at 399.742 kb on + strand, within Rru_A0327at 399.743 kb on - strand, within Rru_A0327at 399.743 kb on - strand, within Rru_A0327at 399.743 kb on - strand, within Rru_A0327at 399.743 kb on - strand, within Rru_A0327at 399.743 kb on - strand, within Rru_A0327at 399.842 kb on + strand, within Rru_A0327at 399.842 kb on + strand, within Rru_A0327at 399.842 kb on + strand, within Rru_A0327at 399.842 kb on + strand, within Rru_A0327at 399.842 kb on + strand, within Rru_A0327at 399.843 kb on - strand, within Rru_A0327at 399.843 kb on - strand, within Rru_A0327at 399.854 kb on - strand, within Rru_A0327at 399.929 kb on + strand, within Rru_A0327at 400.020 kb on + strand, within Rru_A0327at 400.020 kb on + strand, within Rru_A0327at 400.021 kb on - strand, within Rru_A0327at 400.247 kb on + strand, within Rru_A0327at 400.247 kb on + strand, within Rru_A0327at 400.247 kb on + strand, within Rru_A0327at 400.247 kb on + strand, within Rru_A0327at 400.248 kb on - strand, within Rru_A0327at 400.248 kb on - strand, within Rru_A0327at 400.248 kb on - strand, within Rru_A0327at 400.383 kb on + strandat 400.384 kb on - strandat 400.607 kb on - strandat 400.607 kb on - strandat 400.607 kb on - strandat 400.607 kb on - strandat 400.607 kb on - strandat 400.607 kb on - strandat 400.607 kb on - strandat 400.802 kb on + strand, within Rru_A0328at 400.878 kb on + strand, within Rru_A0328at 400.879 kb on - strand, within Rru_A0328at 400.879 kb on - strand, within Rru_A0328at 401.034 kb on + strand, within Rru_A0328at 401.034 kb on + strand, within Rru_A0328at 401.040 kb on - strand, within Rru_A0328at 401.127 kb on + strand, within Rru_A0328at 401.127 kb on + strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.128 kb on - strand, within Rru_A0328at 401.174 kb on + strand, within Rru_A0328at 401.266 kb on - strandat 401.288 kb on + strandat 401.288 kb on + strandat 401.289 kb on - strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.403 kb on + strandat 401.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM
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397,878 + Rru_A0326 0.74 +0.0
397,878 + Rru_A0326 0.74 +0.3
397,878 + Rru_A0326 0.74 +0.0
397,878 + Rru_A0326 0.74 +0.5
397,879 - Rru_A0326 0.74 +0.0
397,879 - Rru_A0326 0.74 -1.0
397,879 - Rru_A0326 0.74 +1.0
397,882 - Rru_A0326 0.74 +0.7
397,882 - Rru_A0326 0.74 +2.2
397,956 + Rru_A0326 0.78 +0.5
397,956 + Rru_A0326 0.78 +0.0
398,024 + Rru_A0326 0.81 +0.0
398,024 + Rru_A0326 0.81 +0.0
398,024 + Rru_A0326 0.81 +0.9
398,024 + Rru_A0326 0.81 +0.0
398,024 + Rru_A0326 0.81 -1.5
398,024 + Rru_A0326 0.81 -0.5
398,024 + Rru_A0326 0.81 +0.5
398,024 + Rru_A0326 0.81 -0.4
398,025 - Rru_A0326 0.81 +1.0
398,025 - Rru_A0326 0.81 +0.2
398,034 - Rru_A0326 0.81 +3.0
398,034 - Rru_A0326 0.81 +0.7
398,314 + +0.7
398,315 - +1.0
398,315 - -0.6
398,501 + +0.0
399,022 + Rru_A0327 0.24 +0.0
399,046 + Rru_A0327 0.25 -1.5
399,047 - Rru_A0327 0.25 +0.0
399,068 + Rru_A0327 0.26 +0.6
399,068 + Rru_A0327 0.26 +0.5
399,068 + Rru_A0327 0.26 +1.0
399,069 - Rru_A0327 0.26 +0.6
399,108 - Rru_A0327 0.28 +0.0
399,435 - Rru_A0327 0.46 +0.6
399,521 + Rru_A0327 0.50 +0.0
399,521 + Rru_A0327 0.50 +1.3
399,522 - Rru_A0327 0.50 +0.0
399,522 - Rru_A0327 0.50 +0.0
399,522 - Rru_A0327 0.50 +0.4
399,742 + Rru_A0327 0.62 +0.8
399,742 + Rru_A0327 0.62 +0.0
399,743 - Rru_A0327 0.62 +0.0
399,743 - Rru_A0327 0.62 +0.0
399,743 - Rru_A0327 0.62 +0.0
399,743 - Rru_A0327 0.62 +0.5
399,743 - Rru_A0327 0.62 +0.5
399,842 + Rru_A0327 0.68 -0.8
399,842 + Rru_A0327 0.68 +1.6
399,842 + Rru_A0327 0.68 +0.0
399,842 + Rru_A0327 0.68 +1.4
399,842 + Rru_A0327 0.68 +0.0
399,843 - Rru_A0327 0.68 +0.0
399,843 - Rru_A0327 0.68 +0.6
399,854 - Rru_A0327 0.68 +0.0
399,929 + Rru_A0327 0.72 +1.1
400,020 + Rru_A0327 0.77 +1.3
400,020 + Rru_A0327 0.77 -0.1
400,021 - Rru_A0327 0.77 +0.0
400,247 + Rru_A0327 0.89 +1.0
400,247 + Rru_A0327 0.89 +0.0
400,247 + Rru_A0327 0.89 +2.4
400,247 + Rru_A0327 0.89 +0.0
400,248 - Rru_A0327 0.89 +0.3
400,248 - Rru_A0327 0.89 +0.4
400,248 - Rru_A0327 0.89 +0.0
400,383 + +0.0
400,384 - -0.0
400,607 - +1.2
400,607 - +0.9
400,607 - +0.6
400,607 - +0.0
400,607 - +1.6
400,607 - +0.0
400,607 - +1.2
400,802 + Rru_A0328 0.26 +0.7
400,878 + Rru_A0328 0.38 +0.8
400,879 - Rru_A0328 0.39 -1.0
400,879 - Rru_A0328 0.39 +0.0
401,034 + Rru_A0328 0.63 +0.0
401,034 + Rru_A0328 0.63 +0.0
401,040 - Rru_A0328 0.64 -0.7
401,127 + Rru_A0328 0.78 +0.4
401,127 + Rru_A0328 0.78 +0.9
401,128 - Rru_A0328 0.78 -0.3
401,128 - Rru_A0328 0.78 -0.7
401,128 - Rru_A0328 0.78 +0.7
401,128 - Rru_A0328 0.78 +1.2
401,128 - Rru_A0328 0.78 +0.0
401,128 - Rru_A0328 0.78 +0.4
401,128 - Rru_A0328 0.78 +1.2
401,174 + Rru_A0328 0.85 +0.6
401,266 - +1.4
401,288 + -1.0
401,288 + +2.0
401,289 - -1.1
401,403 + -1.0
401,403 + +0.7
401,403 + +0.4
401,403 + +0.7
401,403 + +0.7
401,403 + +0.0
401,404 - +0.0

Or see this region's nucleotide sequence