Experiment: deoxycholate 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_847 and Pf6N2E2_848 overlap by 8 nucleotides Pf6N2E2_848 and Pf6N2E2_849 overlap by 19 nucleotides Pf6N2E2_849 and Pf6N2E2_850 are separated by 282 nucleotides Pf6N2E2_850 and Pf6N2E2_851 are separated by 96 nucleotides
Pf6N2E2_847 - Phosphoribosyl transferase domain protein, at 992,337 to 993,041
_847
Pf6N2E2_848 - hypothetical protein, at 993,034 to 993,729
_848
Pf6N2E2_849 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 993,711 to 995,078
_849
Pf6N2E2_850 - hypothetical protein, at 995,361 to 995,474
_850
Pf6N2E2_851 - Osmotically inducible protein Y precursor, at 995,571 to 996,218
_851
Position (kb) 993
994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 992.798 kb on - strand, within Pf6N2E2_847 at 992.934 kb on + strand, within Pf6N2E2_847 at 992.934 kb on + strand, within Pf6N2E2_847 at 992.935 kb on - strand, within Pf6N2E2_847 at 993.172 kb on + strand, within Pf6N2E2_848 at 993.172 kb on + strand, within Pf6N2E2_848 at 993.173 kb on - strand, within Pf6N2E2_848 at 993.173 kb on - strand, within Pf6N2E2_848 at 993.670 kb on + strand at 993.671 kb on - strand at 993.671 kb on - strand at 993.671 kb on - strand at 993.705 kb on - strand at 993.705 kb on - strand at 993.705 kb on - strand at 993.727 kb on + strand at 993.728 kb on - strand at 993.874 kb on + strand, within Pf6N2E2_849 at 993.874 kb on + strand, within Pf6N2E2_849 at 994.115 kb on - strand, within Pf6N2E2_849 at 994.318 kb on + strand, within Pf6N2E2_849 at 994.319 kb on - strand, within Pf6N2E2_849 at 994.321 kb on + strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.483 kb on + strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.523 kb on - strand, within Pf6N2E2_849 at 994.570 kb on + strand, within Pf6N2E2_849 at 994.570 kb on + strand, within Pf6N2E2_849 at 994.607 kb on - strand, within Pf6N2E2_849 at 994.771 kb on + strand, within Pf6N2E2_849 at 994.771 kb on + strand, within Pf6N2E2_849 at 994.772 kb on - strand, within Pf6N2E2_849 at 994.772 kb on - strand, within Pf6N2E2_849 at 994.870 kb on - strand, within Pf6N2E2_849 at 994.873 kb on + strand, within Pf6N2E2_849 at 994.873 kb on + strand, within Pf6N2E2_849 at 994.874 kb on - strand, within Pf6N2E2_849 at 994.874 kb on - strand, within Pf6N2E2_849 at 995.018 kb on + strand at 995.019 kb on - strand at 995.029 kb on + strand at 995.030 kb on - strand at 995.041 kb on + strand at 995.125 kb on + strand at 995.125 kb on + strand at 995.125 kb on + strand at 995.125 kb on + strand at 995.126 kb on - strand at 995.126 kb on - strand at 995.126 kb on - strand at 995.215 kb on + strand at 995.219 kb on + strand at 995.219 kb on + strand at 995.219 kb on + strand at 995.220 kb on - strand at 995.225 kb on + strand at 995.226 kb on - strand at 995.290 kb on - strand at 995.297 kb on + strand at 995.323 kb on - strand at 995.362 kb on + strand at 995.739 kb on - strand, within Pf6N2E2_851 at 995.864 kb on - strand, within Pf6N2E2_851 at 995.928 kb on + strand, within Pf6N2E2_851 at 995.929 kb on - strand, within Pf6N2E2_851 at 995.929 kb on - strand, within Pf6N2E2_851 at 996.015 kb on + strand, within Pf6N2E2_851 at 996.015 kb on + strand, within Pf6N2E2_851 at 996.015 kb on + strand, within Pf6N2E2_851 at 996.016 kb on - strand, within Pf6N2E2_851 at 996.016 kb on - strand, within Pf6N2E2_851 at 996.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M remove 992,798 - Pf6N2E2_847 0.65 +1.1 992,934 + Pf6N2E2_847 0.85 +0.7 992,934 + Pf6N2E2_847 0.85 -0.2 992,935 - Pf6N2E2_847 0.85 +1.5 993,172 + Pf6N2E2_848 0.20 +0.4 993,172 + Pf6N2E2_848 0.20 +0.2 993,173 - Pf6N2E2_848 0.20 +1.5 993,173 - Pf6N2E2_848 0.20 -0.1 993,670 + -1.5 993,671 - -0.2 993,671 - +0.6 993,671 - +1.8 993,705 - +2.2 993,705 - +0.1 993,705 - +1.2 993,727 + +0.4 993,728 - -0.1 993,874 + Pf6N2E2_849 0.12 +1.7 993,874 + Pf6N2E2_849 0.12 +1.3 994,115 - Pf6N2E2_849 0.30 -2.0 994,318 + Pf6N2E2_849 0.44 -2.9 994,319 - Pf6N2E2_849 0.44 -2.6 994,321 + Pf6N2E2_849 0.45 -0.5 994,322 - Pf6N2E2_849 0.45 +1.0 994,322 - Pf6N2E2_849 0.45 -1.5 994,322 - Pf6N2E2_849 0.45 +0.4 994,322 - Pf6N2E2_849 0.45 +0.8 994,483 + Pf6N2E2_849 0.56 +1.4 994,484 - Pf6N2E2_849 0.57 -2.1 994,484 - Pf6N2E2_849 0.57 +0.2 994,484 - Pf6N2E2_849 0.57 +0.5 994,484 - Pf6N2E2_849 0.57 -0.1 994,523 - Pf6N2E2_849 0.59 -2.9 994,570 + Pf6N2E2_849 0.63 -0.6 994,570 + Pf6N2E2_849 0.63 +0.5 994,607 - Pf6N2E2_849 0.65 -1.8 994,771 + Pf6N2E2_849 0.77 -0.1 994,771 + Pf6N2E2_849 0.77 -2.2 994,772 - Pf6N2E2_849 0.78 -1.9 994,772 - Pf6N2E2_849 0.78 -1.9 994,870 - Pf6N2E2_849 0.85 -1.3 994,873 + Pf6N2E2_849 0.85 +1.2 994,873 + Pf6N2E2_849 0.85 -1.0 994,874 - Pf6N2E2_849 0.85 -2.7 994,874 - Pf6N2E2_849 0.85 -1.9 995,018 + +0.5 995,019 - +0.7 995,029 + -0.3 995,030 - +2.3 995,041 + -0.1 995,125 + -2.4 995,125 + -1.1 995,125 + -3.5 995,125 + -1.5 995,126 - -0.3 995,126 - -1.6 995,126 - +1.5 995,215 + +1.5 995,219 + +1.5 995,219 + +1.0 995,219 + -1.1 995,220 - +1.2 995,225 + +0.6 995,226 - +1.8 995,290 - -1.1 995,297 + -2.1 995,323 - -1.1 995,362 + -0.5 995,739 - Pf6N2E2_851 0.26 -1.1 995,864 - Pf6N2E2_851 0.45 -0.0 995,928 + Pf6N2E2_851 0.55 -1.2 995,929 - Pf6N2E2_851 0.55 +3.8 995,929 - Pf6N2E2_851 0.55 -1.6 996,015 + Pf6N2E2_851 0.69 +1.1 996,015 + Pf6N2E2_851 0.69 -0.5 996,015 + Pf6N2E2_851 0.69 +1.3 996,016 - Pf6N2E2_851 0.69 +2.0 996,016 - Pf6N2E2_851 0.69 +0.1 996,016 - +1.5
Or see this region's nucleotide sequence