Experiment: deoxycholate 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_829 and Pf6N2E2_830 are separated by 51 nucleotides Pf6N2E2_830 and Pf6N2E2_831 are separated by 57 nucleotides Pf6N2E2_831 and Pf6N2E2_832 are separated by 48 nucleotides
Pf6N2E2_829 - TesB-like acyl-CoA thioesterase 1, at 967,218 to 967,997
_829
Pf6N2E2_830 - Long-chain fatty acid transport protein, at 968,049 to 969,320
_830
Pf6N2E2_831 - Ketoacyl reductase hetN (EC 1.3.1.-), at 969,378 to 970,163
_831
Pf6N2E2_832 - Outer membrane component of tripartite multidrug resistance system, at 970,212 to 971,675
_832
Position (kb) 968
969
970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 967.077 kb on - strand at 967.142 kb on + strand at 967.215 kb on + strand at 967.216 kb on - strand at 967.216 kb on - strand at 967.216 kb on - strand at 967.399 kb on + strand, within Pf6N2E2_829 at 967.399 kb on + strand, within Pf6N2E2_829 at 967.399 kb on + strand, within Pf6N2E2_829 at 967.400 kb on - strand, within Pf6N2E2_829 at 967.400 kb on - strand, within Pf6N2E2_829 at 967.928 kb on + strand at 967.991 kb on + strand at 967.992 kb on - strand at 967.992 kb on - strand at 967.995 kb on + strand at 967.996 kb on - strand at 967.998 kb on + strand at 967.998 kb on + strand at 967.999 kb on - strand at 968.036 kb on + strand at 968.036 kb on + strand at 968.036 kb on + strand at 968.037 kb on - strand at 968.037 kb on - strand at 968.037 kb on - strand at 968.037 kb on - strand at 968.037 kb on - strand at 968.044 kb on + strand at 968.044 kb on + strand at 968.045 kb on - strand at 968.045 kb on - strand at 968.045 kb on - strand at 968.047 kb on + strand at 968.047 kb on + strand at 968.047 kb on + strand at 968.048 kb on - strand at 968.144 kb on + strand at 968.144 kb on + strand at 968.145 kb on - strand at 968.145 kb on - strand at 968.145 kb on - strand at 968.367 kb on + strand, within Pf6N2E2_830 at 968.367 kb on + strand, within Pf6N2E2_830 at 968.367 kb on + strand, within Pf6N2E2_830 at 968.367 kb on + strand, within Pf6N2E2_830 at 968.367 kb on + strand, within Pf6N2E2_830 at 968.367 kb on + strand, within Pf6N2E2_830 at 968.367 kb on + strand, within Pf6N2E2_830 at 968.367 kb on + strand, within Pf6N2E2_830 at 968.368 kb on - strand, within Pf6N2E2_830 at 968.412 kb on + strand, within Pf6N2E2_830 at 968.413 kb on - strand, within Pf6N2E2_830 at 968.466 kb on + strand, within Pf6N2E2_830 at 968.517 kb on + strand, within Pf6N2E2_830 at 968.517 kb on + strand, within Pf6N2E2_830 at 968.518 kb on - strand, within Pf6N2E2_830 at 968.518 kb on - strand, within Pf6N2E2_830 at 968.518 kb on - strand, within Pf6N2E2_830 at 968.718 kb on + strand, within Pf6N2E2_830 at 968.718 kb on + strand, within Pf6N2E2_830 at 968.718 kb on + strand, within Pf6N2E2_830 at 968.736 kb on + strand, within Pf6N2E2_830 at 968.737 kb on - strand, within Pf6N2E2_830 at 968.737 kb on - strand, within Pf6N2E2_830 at 968.805 kb on + strand, within Pf6N2E2_830 at 968.806 kb on - strand, within Pf6N2E2_830 at 968.806 kb on - strand, within Pf6N2E2_830 at 968.886 kb on + strand, within Pf6N2E2_830 at 968.886 kb on + strand, within Pf6N2E2_830 at 968.887 kb on - strand, within Pf6N2E2_830 at 968.887 kb on - strand, within Pf6N2E2_830 at 968.898 kb on - strand, within Pf6N2E2_830 at 969.037 kb on - strand, within Pf6N2E2_830 at 969.037 kb on - strand, within Pf6N2E2_830 at 969.038 kb on + strand, within Pf6N2E2_830 at 969.198 kb on + strand at 969.204 kb on + strand at 969.204 kb on + strand at 969.204 kb on + strand at 969.204 kb on + strand at 969.205 kb on - strand at 969.205 kb on - strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.258 kb on + strand at 969.259 kb on - strand at 969.259 kb on - strand at 969.296 kb on + strand at 969.297 kb on - strand at 969.680 kb on - strand, within Pf6N2E2_831 at 969.697 kb on + strand, within Pf6N2E2_831 at 969.697 kb on + strand, within Pf6N2E2_831 at 969.698 kb on - strand, within Pf6N2E2_831 at 969.725 kb on - strand, within Pf6N2E2_831 at 970.087 kb on + strand at 970.195 kb on + strand at 970.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M remove 967,077 - +0.5 967,142 + -1.7 967,215 + -2.4 967,216 - +1.5 967,216 - -0.9 967,216 - +1.5 967,399 + Pf6N2E2_829 0.23 +1.7 967,399 + Pf6N2E2_829 0.23 -3.9 967,399 + Pf6N2E2_829 0.23 +0.1 967,400 - Pf6N2E2_829 0.23 -0.5 967,400 - Pf6N2E2_829 0.23 +2.5 967,928 + -1.9 967,991 + +1.4 967,992 - -2.1 967,992 - +0.5 967,995 + -1.9 967,996 - -1.5 967,998 + -1.7 967,998 + +0.7 967,999 - -0.8 968,036 + -0.4 968,036 + +1.5 968,036 + -1.5 968,037 - +1.5 968,037 - +0.8 968,037 - -0.1 968,037 - +0.4 968,037 - -2.2 968,044 + -1.9 968,044 + -1.3 968,045 - +2.6 968,045 - +0.4 968,045 - -0.4 968,047 + -0.2 968,047 + -0.5 968,047 + -1.4 968,048 - +1.5 968,144 + +2.1 968,144 + -2.4 968,145 - +3.8 968,145 - -0.3 968,145 - -0.4 968,367 + Pf6N2E2_830 0.25 -1.8 968,367 + Pf6N2E2_830 0.25 +0.2 968,367 + Pf6N2E2_830 0.25 -2.1 968,367 + Pf6N2E2_830 0.25 +1.8 968,367 + Pf6N2E2_830 0.25 -1.4 968,367 + Pf6N2E2_830 0.25 +2.5 968,367 + Pf6N2E2_830 0.25 +2.1 968,367 + Pf6N2E2_830 0.25 -1.8 968,368 - Pf6N2E2_830 0.25 +1.4 968,412 + Pf6N2E2_830 0.29 +0.2 968,413 - Pf6N2E2_830 0.29 +1.8 968,466 + Pf6N2E2_830 0.33 -0.5 968,517 + Pf6N2E2_830 0.37 +0.4 968,517 + Pf6N2E2_830 0.37 +0.5 968,518 - Pf6N2E2_830 0.37 +0.3 968,518 - Pf6N2E2_830 0.37 -0.1 968,518 - Pf6N2E2_830 0.37 +0.5 968,718 + Pf6N2E2_830 0.53 -0.8 968,718 + Pf6N2E2_830 0.53 -0.3 968,718 + Pf6N2E2_830 0.53 +0.9 968,736 + Pf6N2E2_830 0.54 +1.8 968,737 - Pf6N2E2_830 0.54 -0.0 968,737 - Pf6N2E2_830 0.54 +1.9 968,805 + Pf6N2E2_830 0.59 +0.4 968,806 - Pf6N2E2_830 0.60 +1.8 968,806 - Pf6N2E2_830 0.60 -0.3 968,886 + Pf6N2E2_830 0.66 -2.1 968,886 + Pf6N2E2_830 0.66 -3.5 968,887 - Pf6N2E2_830 0.66 -1.1 968,887 - Pf6N2E2_830 0.66 +3.2 968,898 - Pf6N2E2_830 0.67 +1.4 969,037 - Pf6N2E2_830 0.78 +0.4 969,037 - Pf6N2E2_830 0.78 -1.7 969,038 + Pf6N2E2_830 0.78 +0.5 969,198 + +1.7 969,204 + +0.8 969,204 + -0.1 969,204 + -0.1 969,204 + +0.2 969,205 - +0.5 969,205 - -0.4 969,258 + -0.8 969,258 + -3.1 969,258 + -2.3 969,258 + +1.7 969,258 + -1.1 969,259 - +0.2 969,259 - +1.7 969,296 + +1.0 969,297 - +0.6 969,680 - Pf6N2E2_831 0.38 +1.0 969,697 + Pf6N2E2_831 0.41 +0.1 969,697 + Pf6N2E2_831 0.41 -1.3 969,698 - Pf6N2E2_831 0.41 +0.5 969,725 - Pf6N2E2_831 0.44 -1.7 970,087 + +0.5 970,195 + +1.5 970,196 - -0.1
Or see this region's nucleotide sequence