Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_744

Experiment: deoxycholate 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_743 and Pf6N2E2_744 are separated by 141 nucleotidesPf6N2E2_744 and Pf6N2E2_745 are separated by 164 nucleotidesPf6N2E2_745 and Pf6N2E2_746 are separated by 160 nucleotidesPf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotides Pf6N2E2_743 - Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28), at 852,719 to 854,167 _743 Pf6N2E2_744 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 854,309 to 856,186 _744 Pf6N2E2_745 - Probable transmembrane protein, at 856,351 to 856,668 _745 Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083 _746 Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986 _747 Position (kb) 854 855 856 857Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 853.548 kb on - strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.566 kb on + strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 853.567 kb on - strand, within Pf6N2E2_743at 854.227 kb on + strandat 854.228 kb on - strandat 854.549 kb on + strand, within Pf6N2E2_744at 854.549 kb on + strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.550 kb on - strand, within Pf6N2E2_744at 854.681 kb on + strand, within Pf6N2E2_744at 854.681 kb on + strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.682 kb on - strand, within Pf6N2E2_744at 854.689 kb on + strand, within Pf6N2E2_744at 854.718 kb on - strand, within Pf6N2E2_744at 854.983 kb on + strand, within Pf6N2E2_744at 855.031 kb on + strand, within Pf6N2E2_744at 855.031 kb on + strand, within Pf6N2E2_744at 855.032 kb on - strand, within Pf6N2E2_744at 855.032 kb on - strand, within Pf6N2E2_744at 855.124 kb on + strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.125 kb on - strand, within Pf6N2E2_744at 855.161 kb on + strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.162 kb on - strand, within Pf6N2E2_744at 855.257 kb on + strand, within Pf6N2E2_744at 855.382 kb on + strand, within Pf6N2E2_744at 855.383 kb on - strand, within Pf6N2E2_744at 855.431 kb on - strand, within Pf6N2E2_744at 855.640 kb on - strand, within Pf6N2E2_744at 856.184 kb on + strandat 856.184 kb on + strandat 856.270 kb on + strandat 856.271 kb on - strandat 856.363 kb on + strandat 856.364 kb on - strandat 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.433 kb on + strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.434 kb on - strand, within Pf6N2E2_745at 856.659 kb on + strandat 856.674 kb on + strandat 856.674 kb on + strandat 856.674 kb on + strandat 856.675 kb on - strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.794 kb on + strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.795 kb on - strandat 856.811 kb on - strandat 856.811 kb on - strandat 856.822 kb on - strandat 857.031 kb on - strand, within Pf6N2E2_746at 857.043 kb on + strand, within Pf6N2E2_746at 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.081 kb on + strandat 857.082 kb on - strandat 857.082 kb on - strandat 857.088 kb on + strandat 857.088 kb on + strandat 857.088 kb on + strandat 857.089 kb on - strandat 857.089 kb on - strandat 857.123 kb on + strandat 857.123 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M
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853,548 - Pf6N2E2_743 0.57 -2.0
853,566 + Pf6N2E2_743 0.58 -3.4
853,566 + Pf6N2E2_743 0.58 -2.4
853,566 + Pf6N2E2_743 0.58 +1.0
853,566 + Pf6N2E2_743 0.58 +2.8
853,566 + Pf6N2E2_743 0.58 +2.3
853,566 + Pf6N2E2_743 0.58 -0.3
853,567 - Pf6N2E2_743 0.59 -1.3
853,567 - Pf6N2E2_743 0.59 +0.7
853,567 - Pf6N2E2_743 0.59 -1.0
853,567 - Pf6N2E2_743 0.59 +0.1
853,567 - Pf6N2E2_743 0.59 -0.7
853,567 - Pf6N2E2_743 0.59 +1.1
854,227 + -0.8
854,228 - +3.0
854,549 + Pf6N2E2_744 0.13 -1.7
854,549 + Pf6N2E2_744 0.13 -1.3
854,550 - Pf6N2E2_744 0.13 -0.3
854,550 - Pf6N2E2_744 0.13 -1.1
854,550 - Pf6N2E2_744 0.13 +1.2
854,681 + Pf6N2E2_744 0.20 -1.1
854,681 + Pf6N2E2_744 0.20 -0.5
854,682 - Pf6N2E2_744 0.20 +2.0
854,682 - Pf6N2E2_744 0.20 -1.7
854,682 - Pf6N2E2_744 0.20 +1.5
854,689 + Pf6N2E2_744 0.20 -2.0
854,718 - Pf6N2E2_744 0.22 -2.0
854,983 + Pf6N2E2_744 0.36 -1.2
855,031 + Pf6N2E2_744 0.38 +2.2
855,031 + Pf6N2E2_744 0.38 -1.8
855,032 - Pf6N2E2_744 0.38 -0.5
855,032 - Pf6N2E2_744 0.38 +0.3
855,124 + Pf6N2E2_744 0.43 -1.5
855,125 - Pf6N2E2_744 0.43 -3.0
855,125 - Pf6N2E2_744 0.43 -1.5
855,125 - Pf6N2E2_744 0.43 +0.7
855,125 - Pf6N2E2_744 0.43 -1.1
855,161 + Pf6N2E2_744 0.45 +1.3
855,162 - Pf6N2E2_744 0.45 -3.0
855,162 - Pf6N2E2_744 0.45 -1.0
855,162 - Pf6N2E2_744 0.45 +0.9
855,162 - Pf6N2E2_744 0.45 -2.0
855,257 + Pf6N2E2_744 0.50 +0.3
855,382 + Pf6N2E2_744 0.57 +1.5
855,383 - Pf6N2E2_744 0.57 +1.5
855,431 - Pf6N2E2_744 0.60 -2.0
855,640 - Pf6N2E2_744 0.71 +0.5
856,184 + +0.5
856,184 + -0.4
856,270 + -1.1
856,271 - -2.3
856,363 + +0.9
856,364 - +1.6
856,433 + Pf6N2E2_745 0.26 -0.5
856,433 + Pf6N2E2_745 0.26 +0.6
856,433 + Pf6N2E2_745 0.26 -3.3
856,433 + Pf6N2E2_745 0.26 +0.8
856,433 + Pf6N2E2_745 0.26 -1.1
856,433 + Pf6N2E2_745 0.26 -0.3
856,433 + Pf6N2E2_745 0.26 +0.4
856,433 + Pf6N2E2_745 0.26 +0.2
856,434 - Pf6N2E2_745 0.26 -0.9
856,434 - Pf6N2E2_745 0.26 -0.5
856,434 - Pf6N2E2_745 0.26 -1.8
856,434 - Pf6N2E2_745 0.26 -0.3
856,659 + +0.2
856,674 + +1.3
856,674 + +0.5
856,674 + -0.1
856,675 - +0.2
856,794 + +0.8
856,794 + -0.3
856,794 + +0.9
856,794 + +0.5
856,795 - +1.8
856,795 - +0.7
856,795 - +1.3
856,795 - +0.7
856,811 - -3.3
856,811 - -1.1
856,822 - +1.2
857,031 - Pf6N2E2_746 0.79 +0.7
857,043 + Pf6N2E2_746 0.84 +2.9
857,081 + -2.4
857,081 + +0.2
857,081 + -0.8
857,081 + +0.8
857,081 + +1.3
857,081 + +1.5
857,082 - -1.3
857,082 - -2.3
857,088 + +1.2
857,088 + -3.0
857,088 + -0.3
857,089 - -1.4
857,089 - -0.8
857,123 + +3.4
857,123 + +0.6

Or see this region's nucleotide sequence