Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_685

Experiment: deoxycholate 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_684 and Pf6N2E2_685 are separated by 200 nucleotidesPf6N2E2_685 and Pf6N2E2_686 are separated by 65 nucleotides Pf6N2E2_684 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 789,056 to 790,447 _684 Pf6N2E2_685 - Ferrichrome-iron receptor, at 790,648 to 792,777 _685 Pf6N2E2_686 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 792,843 to 793,577 _686 Position (kb) 790 791 792 793Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 789.654 kb on - strand, within Pf6N2E2_684at 789.656 kb on + strand, within Pf6N2E2_684at 789.657 kb on - strand, within Pf6N2E2_684at 789.657 kb on - strand, within Pf6N2E2_684at 789.657 kb on - strandat 789.763 kb on + strand, within Pf6N2E2_684at 789.764 kb on - strand, within Pf6N2E2_684at 789.764 kb on - strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.795 kb on - strand, within Pf6N2E2_684at 789.795 kb on - strand, within Pf6N2E2_684at 789.837 kb on - strand, within Pf6N2E2_684at 789.893 kb on + strand, within Pf6N2E2_684at 789.959 kb on + strand, within Pf6N2E2_684at 789.959 kb on + strand, within Pf6N2E2_684at 789.959 kb on + strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 790.007 kb on + strand, within Pf6N2E2_684at 790.007 kb on + strand, within Pf6N2E2_684at 790.008 kb on - strand, within Pf6N2E2_684at 790.125 kb on - strand, within Pf6N2E2_684at 790.177 kb on + strand, within Pf6N2E2_684at 790.177 kb on + strand, within Pf6N2E2_684at 790.177 kb on + strand, within Pf6N2E2_684at 790.178 kb on - strand, within Pf6N2E2_684at 790.376 kb on + strandat 790.376 kb on + strandat 790.377 kb on - strandat 790.446 kb on - strandat 790.634 kb on - strandat 790.634 kb on - strandat 790.687 kb on + strandat 790.688 kb on - strandat 790.688 kb on - strandat 790.777 kb on + strandat 790.778 kb on - strandat 790.940 kb on - strand, within Pf6N2E2_685at 790.989 kb on + strand, within Pf6N2E2_685at 790.990 kb on - strand, within Pf6N2E2_685at 790.990 kb on - strand, within Pf6N2E2_685at 790.990 kb on - strand, within Pf6N2E2_685at 791.026 kb on + strand, within Pf6N2E2_685at 791.681 kb on - strand, within Pf6N2E2_685at 791.686 kb on - strand, within Pf6N2E2_685at 791.780 kb on - strand, within Pf6N2E2_685at 791.788 kb on + strand, within Pf6N2E2_685at 791.789 kb on - strand, within Pf6N2E2_685at 791.789 kb on - strand, within Pf6N2E2_685at 791.789 kb on - strand, within Pf6N2E2_685at 791.789 kb on - strand, within Pf6N2E2_685at 791.795 kb on - strand, within Pf6N2E2_685at 791.795 kb on - strand, within Pf6N2E2_685at 791.848 kb on - strand, within Pf6N2E2_685at 791.863 kb on + strand, within Pf6N2E2_685at 791.863 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.010 kb on - strand, within Pf6N2E2_685at 792.010 kb on - strand, within Pf6N2E2_685at 792.010 kb on - strand, within Pf6N2E2_685at 792.013 kb on + strand, within Pf6N2E2_685at 792.014 kb on - strand, within Pf6N2E2_685at 792.014 kb on - strand, within Pf6N2E2_685at 792.088 kb on + strand, within Pf6N2E2_685at 792.088 kb on + strand, within Pf6N2E2_685at 792.123 kb on + strand, within Pf6N2E2_685at 792.240 kb on - strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.246 kb on - strand, within Pf6N2E2_685at 792.259 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.313 kb on - strand, within Pf6N2E2_685at 792.313 kb on - strand, within Pf6N2E2_685at 792.406 kb on + strand, within Pf6N2E2_685at 792.406 kb on + strand, within Pf6N2E2_685at 792.407 kb on - strand, within Pf6N2E2_685at 792.467 kb on + strand, within Pf6N2E2_685at 792.467 kb on + strand, within Pf6N2E2_685at 792.499 kb on + strand, within Pf6N2E2_685at 792.499 kb on + strand, within Pf6N2E2_685at 792.499 kb on + strand, within Pf6N2E2_685at 792.607 kb on + strandat 792.607 kb on + strandat 792.607 kb on + strandat 792.607 kb on + strandat 792.608 kb on - strandat 792.608 kb on - strandat 792.634 kb on + strandat 792.634 kb on + strandat 792.635 kb on - strandat 792.635 kb on - strandat 792.694 kb on + strandat 792.721 kb on + strandat 792.721 kb on + strandat 792.722 kb on - strandat 792.766 kb on + strandat 792.767 kb on - strandat 792.830 kb on - strandat 792.844 kb on + strandat 792.916 kb on + strandat 792.916 kb on + strandat 792.917 kb on - strand, within Pf6N2E2_686at 792.917 kb on - strand, within Pf6N2E2_686at 793.229 kb on - strand, within Pf6N2E2_686at 793.257 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.492 kb on + strand, within Pf6N2E2_686at 793.679 kb on + strandat 793.691 kb on + strandat 793.691 kb on + strandat 793.691 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M
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789,654 - Pf6N2E2_684 0.43 +2.2
789,656 + Pf6N2E2_684 0.43 +1.3
789,657 - Pf6N2E2_684 0.43 -2.3
789,657 - Pf6N2E2_684 0.43 +1.5
789,657 - -0.1
789,763 + Pf6N2E2_684 0.51 -1.5
789,764 - Pf6N2E2_684 0.51 -2.1
789,764 - Pf6N2E2_684 0.51 +0.8
789,794 + Pf6N2E2_684 0.53 -0.8
789,794 + Pf6N2E2_684 0.53 -0.7
789,794 + Pf6N2E2_684 0.53 -0.8
789,794 + Pf6N2E2_684 0.53 -1.8
789,795 - Pf6N2E2_684 0.53 -1.8
789,795 - Pf6N2E2_684 0.53 +0.4
789,837 - Pf6N2E2_684 0.56 -0.7
789,893 + Pf6N2E2_684 0.60 -0.7
789,959 + Pf6N2E2_684 0.65 +1.9
789,959 + Pf6N2E2_684 0.65 -1.8
789,959 + Pf6N2E2_684 0.65 +2.2
789,960 - Pf6N2E2_684 0.65 +0.8
789,960 - Pf6N2E2_684 0.65 -3.0
789,960 - Pf6N2E2_684 0.65 -0.5
789,960 - Pf6N2E2_684 0.65 -0.9
789,960 - Pf6N2E2_684 0.65 +0.8
789,960 - Pf6N2E2_684 0.65 +0.4
790,007 + Pf6N2E2_684 0.68 +1.7
790,007 + Pf6N2E2_684 0.68 -0.5
790,008 - Pf6N2E2_684 0.68 -3.4
790,125 - Pf6N2E2_684 0.77 -2.1
790,177 + Pf6N2E2_684 0.81 +2.4
790,177 + Pf6N2E2_684 0.81 +0.5
790,177 + Pf6N2E2_684 0.81 +0.9
790,178 - Pf6N2E2_684 0.81 -0.3
790,376 + -1.0
790,376 + +1.3
790,377 - -0.8
790,446 - -2.3
790,634 - +2.2
790,634 - -0.7
790,687 + +0.0
790,688 - -1.3
790,688 - -0.8
790,777 + +1.4
790,778 - -1.5
790,940 - Pf6N2E2_685 0.14 +0.2
790,989 + Pf6N2E2_685 0.16 +1.5
790,990 - Pf6N2E2_685 0.16 +1.5
790,990 - Pf6N2E2_685 0.16 -2.5
790,990 - Pf6N2E2_685 0.16 -1.5
791,026 + Pf6N2E2_685 0.18 +0.4
791,681 - Pf6N2E2_685 0.48 +1.1
791,686 - Pf6N2E2_685 0.49 -1.1
791,780 - Pf6N2E2_685 0.53 +0.2
791,788 + Pf6N2E2_685 0.54 -1.7
791,789 - Pf6N2E2_685 0.54 +2.3
791,789 - Pf6N2E2_685 0.54 +1.7
791,789 - Pf6N2E2_685 0.54 +1.7
791,789 - Pf6N2E2_685 0.54 -1.4
791,795 - Pf6N2E2_685 0.54 -0.1
791,795 - Pf6N2E2_685 0.54 +1.3
791,848 - Pf6N2E2_685 0.56 -0.2
791,863 + Pf6N2E2_685 0.57 -0.5
791,863 + Pf6N2E2_685 0.57 +0.3
792,009 + Pf6N2E2_685 0.64 -2.1
792,009 + Pf6N2E2_685 0.64 +1.4
792,009 + Pf6N2E2_685 0.64 +1.3
792,009 + Pf6N2E2_685 0.64 +0.1
792,009 + Pf6N2E2_685 0.64 +0.8
792,010 - Pf6N2E2_685 0.64 -2.0
792,010 - Pf6N2E2_685 0.64 +0.9
792,010 - Pf6N2E2_685 0.64 -0.9
792,013 + Pf6N2E2_685 0.64 -0.5
792,014 - Pf6N2E2_685 0.64 -1.8
792,014 - Pf6N2E2_685 0.64 -2.3
792,088 + Pf6N2E2_685 0.68 -0.1
792,088 + Pf6N2E2_685 0.68 +2.2
792,123 + Pf6N2E2_685 0.69 +2.1
792,240 - Pf6N2E2_685 0.75 -0.7
792,245 + Pf6N2E2_685 0.75 -1.0
792,245 + Pf6N2E2_685 0.75 +0.9
792,245 + Pf6N2E2_685 0.75 +0.2
792,245 + Pf6N2E2_685 0.75 +0.2
792,245 + Pf6N2E2_685 0.75 +0.7
792,245 + Pf6N2E2_685 0.75 +1.5
792,245 + Pf6N2E2_685 0.75 +1.3
792,245 + Pf6N2E2_685 0.75 -0.1
792,245 + Pf6N2E2_685 0.75 +0.1
792,246 - Pf6N2E2_685 0.75 +2.4
792,259 + Pf6N2E2_685 0.76 +0.7
792,312 + Pf6N2E2_685 0.78 -2.3
792,312 + Pf6N2E2_685 0.78 +0.9
792,312 + Pf6N2E2_685 0.78 +1.4
792,312 + Pf6N2E2_685 0.78 -0.3
792,312 + Pf6N2E2_685 0.78 +2.1
792,313 - Pf6N2E2_685 0.78 -0.5
792,313 - Pf6N2E2_685 0.78 +1.0
792,406 + Pf6N2E2_685 0.83 -1.7
792,406 + Pf6N2E2_685 0.83 -0.5
792,407 - Pf6N2E2_685 0.83 +1.8
792,467 + Pf6N2E2_685 0.85 -1.2
792,467 + Pf6N2E2_685 0.85 +1.2
792,499 + Pf6N2E2_685 0.87 +0.5
792,499 + Pf6N2E2_685 0.87 -1.5
792,499 + Pf6N2E2_685 0.87 +0.9
792,607 + -1.3
792,607 + -2.1
792,607 + +0.4
792,607 + -3.3
792,608 - -3.1
792,608 - +0.0
792,634 + +0.6
792,634 + +0.5
792,635 - -0.3
792,635 - +2.9
792,694 + +0.5
792,721 + -1.3
792,721 + -0.7
792,722 - +1.1
792,766 + +1.3
792,767 - -0.3
792,830 - +1.1
792,844 + +1.4
792,916 + -3.8
792,916 + -2.8
792,917 - Pf6N2E2_686 0.10 -0.3
792,917 - Pf6N2E2_686 0.10 -2.8
793,229 - Pf6N2E2_686 0.53 -2.1
793,257 + Pf6N2E2_686 0.56 +1.5
793,490 + Pf6N2E2_686 0.88 -1.7
793,490 + Pf6N2E2_686 0.88 +1.2
793,490 + Pf6N2E2_686 0.88 -1.8
793,490 + Pf6N2E2_686 0.88 +1.8
793,491 - Pf6N2E2_686 0.88 -1.8
793,491 - Pf6N2E2_686 0.88 -1.3
793,491 - Pf6N2E2_686 0.88 +0.1
793,491 - Pf6N2E2_686 0.88 +2.4
793,491 - Pf6N2E2_686 0.88 -2.9
793,491 - Pf6N2E2_686 0.88 +0.7
793,491 - Pf6N2E2_686 0.88 +0.6
793,492 + Pf6N2E2_686 0.88 -1.3
793,679 + -1.5
793,691 + -2.1
793,691 + -2.0
793,691 + +0.8

Or see this region's nucleotide sequence