Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5635

Experiment: deoxycholate 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	deoxycholate 0.0125 M
6,449,167	+		Pf6N2E2_5633	0.88	+1.2
6,449,167	+		Pf6N2E2_5633	0.88	-3.3
6,449,167	+		Pf6N2E2_5633	0.88	-2.4
6,449,167	+		Pf6N2E2_5633	0.88	-1.4
6,449,167	+		Pf6N2E2_5633	0.88	-0.7
6,449,167	+		Pf6N2E2_5633	0.88	+1.1
6,449,167	+		Pf6N2E2_5633	0.88	+0.2
6,449,167	+		Pf6N2E2_5633	0.88	-0.4
6,449,168	-		Pf6N2E2_5633	0.88	+2.4
6,449,168	-		Pf6N2E2_5633	0.88	+1.7
6,449,168	-		Pf6N2E2_5633	0.88	+0.7
6,449,168	-		Pf6N2E2_5633	0.88	-0.7
6,449,168	-		Pf6N2E2_5633	0.88	+0.0
6,449,338	+				-0.3
6,449,355	-				+0.0
6,449,355	-				-0.8
6,449,378	+				+2.3
6,449,482	+				+2.4
6,449,483	-				+0.8
6,449,483	-				-2.4
6,449,574	-				-0.1
6,449,832	+		Pf6N2E2_5634	0.37	-2.7
6,449,832	+		Pf6N2E2_5634	0.37	+0.6
6,449,833	-		Pf6N2E2_5634	0.37	+1.4
6,449,833	-		Pf6N2E2_5634	0.37	-1.4
6,449,833	-		Pf6N2E2_5634	0.37	+1.1
6,449,833	-		Pf6N2E2_5634	0.37	-0.2
6,449,871	-		Pf6N2E2_5634	0.46	-0.5
6,449,871	-		Pf6N2E2_5634	0.46	-2.6
6,449,884	+		Pf6N2E2_5634	0.50	-1.2
6,449,884	+		Pf6N2E2_5634	0.50	+1.0
6,449,885	-		Pf6N2E2_5634	0.50	+1.8
6,449,885	-		Pf6N2E2_5634	0.50	-0.0
6,449,885	-		Pf6N2E2_5634	0.50	+1.1
6,449,885	-		Pf6N2E2_5634	0.50	+0.3
6,450,091	-				+1.3
6,450,091	-				+1.1
6,450,091	-				+2.0
6,450,133	-				+1.9
6,450,138	+				-0.9
6,450,138	+				+0.6
6,450,138	+				-2.2
6,450,138	+				-1.9
6,450,138	+				-0.1
6,450,138	+				-0.2
6,450,138	+				-2.6
6,450,139	-				-2.9
6,450,270	+		Pf6N2E2_5635	0.15	+0.5
6,450,271	-		Pf6N2E2_5635	0.15	-0.2
6,450,570	+		Pf6N2E2_5635	0.40	-0.3
6,450,570	+		Pf6N2E2_5635	0.40	+0.1
6,450,571	-		Pf6N2E2_5635	0.40	+0.5
6,450,571	-		Pf6N2E2_5635	0.40	+0.6
6,450,571	-		Pf6N2E2_5635	0.40	-1.6
6,450,573	+		Pf6N2E2_5635	0.40	-2.1
6,450,573	+		Pf6N2E2_5635	0.40	+0.9
6,450,573	+		Pf6N2E2_5635	0.40	+0.0
6,450,574	-		Pf6N2E2_5635	0.40	+2.1
6,450,574	-		Pf6N2E2_5635	0.40	-0.6
6,450,745	+		Pf6N2E2_5635	0.55	-2.6
6,450,745	+		Pf6N2E2_5635	0.55	+1.0
6,450,745	+		Pf6N2E2_5635	0.55	-2.2
6,450,745	+		Pf6N2E2_5635	0.55	+2.8
6,450,746	-		Pf6N2E2_5635	0.55	+1.0
6,450,746	-		Pf6N2E2_5635	0.55	-2.4
6,450,746	-		Pf6N2E2_5635	0.55	-0.6
6,450,746	-		Pf6N2E2_5635	0.55	-2.4
6,450,746	-		Pf6N2E2_5635	0.55	-1.0
6,450,825	+		Pf6N2E2_5635	0.61	-1.8
6,451,069	+		Pf6N2E2_5635	0.82	-0.1
6,451,117	-		Pf6N2E2_5635	0.86	-0.3
6,451,117	-		Pf6N2E2_5635	0.86	+2.5
6,451,316	+				+1.5
6,451,316	+				+1.6
6,451,317	-				+0.4
6,451,317	-				-1.0
6,451,320	+				-1.2
6,451,320	+				-2.2
6,451,329	+				+0.3
6,451,329	+				-1.7
6,451,367	+				-1.9
6,451,373	+				-2.6
6,451,373	+				+0.2
6,451,373	+				-1.4
6,451,373	+				+0.4
6,451,740	+		Pf6N2E2_5637	0.56	-1.0
6,451,740	+		Pf6N2E2_5637	0.56	+1.2
6,451,740	+		Pf6N2E2_5637	0.56	+0.6
6,451,741	-		Pf6N2E2_5637	0.57	+2.3
6,451,741	-		Pf6N2E2_5637	0.57	-1.4
6,451,741	-		Pf6N2E2_5637	0.57	-1.7
6,451,741	-		Pf6N2E2_5637	0.57	+1.9
6,451,741	-		Pf6N2E2_5637	0.57	-0.0
6,451,787	+		Pf6N2E2_5637	0.89	+1.3
6,451,829	+				-0.7
6,451,829	+				+0.8
6,451,830	-				-1.3
6,451,870	+				+0.3
6,451,871	-				-0.2
6,451,871	-				-0.2
6,451,871	-				+1.1
6,451,871	-				+0.2
6,451,871	-				+0.0
6,451,899	+				-0.6
6,451,900	-				+1.2
6,451,900	-				-1.4
6,451,931	+				+1.0
6,451,931	+				+0.6
6,451,932	-				-0.9
6,451,949	+				+0.9