Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4011

Experiment: deoxycholate 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4010 and Pf6N2E2_4011 are separated by 296 nucleotidesPf6N2E2_4011 and Pf6N2E2_4012 are separated by 267 nucleotides Pf6N2E2_4010 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 4,680,594 to 4,681,778 _4010 Pf6N2E2_4011 - Sensory box/GGDEF family protein, at 4,682,075 to 4,683,064 _4011 Pf6N2E2_4012 - response regulator, at 4,683,332 to 4,684,549 _4012 Position (kb) 4682 4683 4684Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4681.228 kb on - strand, within Pf6N2E2_4010at 4681.606 kb on - strand, within Pf6N2E2_4010at 4681.752 kb on + strandat 4681.753 kb on - strandat 4681.936 kb on - strandat 4681.936 kb on - strandat 4681.986 kb on + strandat 4681.987 kb on - strandat 4681.987 kb on - strandat 4682.044 kb on + strandat 4682.044 kb on + strandat 4682.091 kb on + strandat 4682.091 kb on + strandat 4682.091 kb on + strandat 4682.091 kb on + strandat 4682.099 kb on + strandat 4682.100 kb on - strandat 4682.106 kb on + strandat 4682.106 kb on + strandat 4682.107 kb on - strandat 4682.264 kb on + strand, within Pf6N2E2_4011at 4682.264 kb on + strand, within Pf6N2E2_4011at 4682.264 kb on + strand, within Pf6N2E2_4011at 4682.264 kb on + strand, within Pf6N2E2_4011at 4682.264 kb on + strand, within Pf6N2E2_4011at 4682.264 kb on + strand, within Pf6N2E2_4011at 4682.264 kb on + strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.265 kb on - strand, within Pf6N2E2_4011at 4682.349 kb on - strand, within Pf6N2E2_4011at 4682.349 kb on - strand, within Pf6N2E2_4011at 4682.349 kb on - strand, within Pf6N2E2_4011at 4682.377 kb on + strand, within Pf6N2E2_4011at 4682.377 kb on + strand, within Pf6N2E2_4011at 4682.423 kb on + strand, within Pf6N2E2_4011at 4682.658 kb on + strand, within Pf6N2E2_4011at 4682.658 kb on + strand, within Pf6N2E2_4011at 4682.659 kb on - strand, within Pf6N2E2_4011at 4682.659 kb on - strand, within Pf6N2E2_4011at 4682.659 kb on - strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.939 kb on - strand, within Pf6N2E2_4011at 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.040 kb on + strandat 4683.041 kb on - strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.224 kb on - strandat 4683.333 kb on + strandat 4683.334 kb on - strandat 4683.477 kb on + strand, within Pf6N2E2_4012at 4683.478 kb on - strand, within Pf6N2E2_4012at 4683.496 kb on + strand, within Pf6N2E2_4012at 4683.496 kb on + strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.551 kb on + strand, within Pf6N2E2_4012at 4683.696 kb on + strand, within Pf6N2E2_4012at 4683.697 kb on - strand, within Pf6N2E2_4012

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Per-strain Table

Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M
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4,681,228 - Pf6N2E2_4010 0.54 +0.9
4,681,606 - Pf6N2E2_4010 0.85 -0.9
4,681,752 + +0.3
4,681,753 - +0.9
4,681,936 - +1.4
4,681,936 - -0.1
4,681,986 + -1.3
4,681,987 - +0.9
4,681,987 - -0.8
4,682,044 + -0.8
4,682,044 + +1.5
4,682,091 + -1.9
4,682,091 + -1.0
4,682,091 + -0.3
4,682,091 + +1.8
4,682,099 + -0.5
4,682,100 - +2.1
4,682,106 + +0.7
4,682,106 + +0.9
4,682,107 - +0.7
4,682,264 + Pf6N2E2_4011 0.19 -2.7
4,682,264 + Pf6N2E2_4011 0.19 -2.6
4,682,264 + Pf6N2E2_4011 0.19 +1.0
4,682,264 + Pf6N2E2_4011 0.19 +0.4
4,682,264 + Pf6N2E2_4011 0.19 +1.4
4,682,264 + Pf6N2E2_4011 0.19 +0.3
4,682,264 + Pf6N2E2_4011 0.19 +1.0
4,682,265 - Pf6N2E2_4011 0.19 -2.6
4,682,265 - Pf6N2E2_4011 0.19 -0.5
4,682,265 - Pf6N2E2_4011 0.19 +0.9
4,682,265 - Pf6N2E2_4011 0.19 -3.6
4,682,265 - Pf6N2E2_4011 0.19 +0.8
4,682,265 - Pf6N2E2_4011 0.19 +0.5
4,682,265 - Pf6N2E2_4011 0.19 -1.4
4,682,265 - Pf6N2E2_4011 0.19 -1.1
4,682,265 - Pf6N2E2_4011 0.19 +1.5
4,682,265 - Pf6N2E2_4011 0.19 +0.5
4,682,349 - Pf6N2E2_4011 0.28 +0.9
4,682,349 - Pf6N2E2_4011 0.28 -1.0
4,682,349 - Pf6N2E2_4011 0.28 +0.7
4,682,377 + Pf6N2E2_4011 0.31 +0.8
4,682,377 + Pf6N2E2_4011 0.31 -0.5
4,682,423 + Pf6N2E2_4011 0.35 -0.1
4,682,658 + Pf6N2E2_4011 0.59 +1.2
4,682,658 + Pf6N2E2_4011 0.59 +1.2
4,682,659 - Pf6N2E2_4011 0.59 +1.7
4,682,659 - Pf6N2E2_4011 0.59 +1.0
4,682,659 - Pf6N2E2_4011 0.59 +1.4
4,682,665 + Pf6N2E2_4011 0.60 -0.0
4,682,665 + Pf6N2E2_4011 0.60 +2.5
4,682,665 + Pf6N2E2_4011 0.60 +1.1
4,682,665 + Pf6N2E2_4011 0.60 -1.5
4,682,666 - Pf6N2E2_4011 0.60 +0.2
4,682,666 - Pf6N2E2_4011 0.60 -1.2
4,682,666 - Pf6N2E2_4011 0.60 +1.0
4,682,666 - Pf6N2E2_4011 0.60 -3.1
4,682,666 - Pf6N2E2_4011 0.60 +0.0
4,682,666 - Pf6N2E2_4011 0.60 +1.7
4,682,723 + Pf6N2E2_4011 0.65 +2.2
4,682,723 + Pf6N2E2_4011 0.65 +1.4
4,682,723 + Pf6N2E2_4011 0.65 -1.4
4,682,723 + Pf6N2E2_4011 0.65 +0.5
4,682,723 + Pf6N2E2_4011 0.65 +0.1
4,682,723 + Pf6N2E2_4011 0.65 +1.9
4,682,723 + Pf6N2E2_4011 0.65 -0.1
4,682,724 - Pf6N2E2_4011 0.66 -1.0
4,682,724 - Pf6N2E2_4011 0.66 -1.7
4,682,724 - Pf6N2E2_4011 0.66 -2.6
4,682,724 - Pf6N2E2_4011 0.66 +0.9
4,682,724 - Pf6N2E2_4011 0.66 +0.9
4,682,724 - Pf6N2E2_4011 0.66 -2.6
4,682,724 - Pf6N2E2_4011 0.66 +3.0
4,682,724 - Pf6N2E2_4011 0.66 +0.9
4,682,939 - Pf6N2E2_4011 0.87 +2.3
4,683,020 + +1.1
4,683,020 + +0.8
4,683,020 + +1.4
4,683,020 + +1.7
4,683,020 + -3.0
4,683,021 - +1.3
4,683,021 - +2.3
4,683,021 - -2.0
4,683,021 - +0.4
4,683,021 - -1.6
4,683,021 - +0.6
4,683,021 - -0.8
4,683,040 + +1.3
4,683,041 - +2.4
4,683,223 + -0.9
4,683,223 + -3.1
4,683,223 + +0.3
4,683,223 + +0.0
4,683,223 + +1.1
4,683,223 + +0.3
4,683,224 - +2.3
4,683,333 + +1.4
4,683,334 - +2.1
4,683,477 + Pf6N2E2_4012 0.12 +1.6
4,683,478 - Pf6N2E2_4012 0.12 +0.4
4,683,496 + Pf6N2E2_4012 0.13 +0.5
4,683,496 + Pf6N2E2_4012 0.13 -1.7
4,683,497 - Pf6N2E2_4012 0.14 -0.0
4,683,497 - Pf6N2E2_4012 0.14 -2.5
4,683,497 - Pf6N2E2_4012 0.14 -0.4
4,683,497 - Pf6N2E2_4012 0.14 +1.1
4,683,497 - Pf6N2E2_4012 0.14 -2.3
4,683,497 - Pf6N2E2_4012 0.14 -3.1
4,683,498 + Pf6N2E2_4012 0.14 +1.0
4,683,498 + Pf6N2E2_4012 0.14 -1.7
4,683,498 + Pf6N2E2_4012 0.14 -0.6
4,683,498 + Pf6N2E2_4012 0.14 -2.1
4,683,498 + Pf6N2E2_4012 0.14 +1.1
4,683,498 + Pf6N2E2_4012 0.14 -2.2
4,683,498 + Pf6N2E2_4012 0.14 -0.1
4,683,499 - Pf6N2E2_4012 0.14 +0.4
4,683,499 - Pf6N2E2_4012 0.14 -1.6
4,683,499 - Pf6N2E2_4012 0.14 +2.4
4,683,499 - Pf6N2E2_4012 0.14 -0.1
4,683,499 - Pf6N2E2_4012 0.14 +2.1
4,683,551 + Pf6N2E2_4012 0.18 -2.5
4,683,696 + Pf6N2E2_4012 0.30 +1.3
4,683,697 - Pf6N2E2_4012 0.30 -3.3

Or see this region's nucleotide sequence