Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3567

Experiment: deoxycholate 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	deoxycholate 0.0125 M
4,158,416	+		Pf6N2E2_3566	0.74	-2.6
4,158,417	-		Pf6N2E2_3566	0.74	-0.6
4,158,417	-		Pf6N2E2_3566	0.74	-0.3
4,158,417	-		Pf6N2E2_3566	0.74	-0.4
4,158,417	-		Pf6N2E2_3566	0.74	+1.3
4,158,417	-		Pf6N2E2_3566	0.74	-1.1
4,158,649	+		Pf6N2E2_3566	0.85	+0.4
4,158,649	+		Pf6N2E2_3566	0.85	-2.7
4,158,649	+		Pf6N2E2_3566	0.85	-3.0
4,159,036	+				+1.7
4,159,037	-				+2.0
4,159,098	+				-1.4
4,159,143	+				-1.3
4,159,144	-				+1.4
4,159,144	-				+2.3
4,159,144	-				+0.9
4,159,144	-				+1.0
4,159,144	-				-1.4
4,159,144	-				+0.5
4,159,167	+				-1.2
4,159,168	-				+1.5
4,159,168	-				-2.2
4,159,210	-				-1.1
4,159,245	-				+1.2
4,159,247	+				-2.2
4,159,248	-				-2.4
4,159,248	-				-1.2
4,159,269	+				-2.1
4,159,270	-				-2.2
4,159,288	+				-0.2
4,159,289	-				+0.7
4,159,289	-				-3.1
4,159,289	-				-0.7
4,159,350	+				-2.2
4,159,350	+				+0.0
4,159,350	+				+1.8
4,159,351	-				-1.7
4,159,418	-		Pf6N2E2_3567	0.19	+1.2
4,159,448	+		Pf6N2E2_3567	0.27	-3.3
4,159,449	-		Pf6N2E2_3567	0.27	-0.4
4,159,514	+		Pf6N2E2_3567	0.42	+2.0
4,159,684	+		Pf6N2E2_3567	0.83	+2.9
4,159,685	-		Pf6N2E2_3567	0.83	-2.9
4,159,872	+				+3.1
4,159,872	+				-1.7
4,159,873	-				-2.0
4,159,873	-				-1.0
4,159,873	-				-1.5
4,159,873	-				-3.0
4,160,057	-		Pf6N2E2_3568	0.23	-0.8
4,160,142	-		Pf6N2E2_3568	0.36	-1.6
4,160,172	+		Pf6N2E2_3568	0.41	-0.1
4,160,172	+		Pf6N2E2_3568	0.41	+0.3
4,160,553	+				+1.3
4,160,553	+				-1.2
4,160,553	+				+1.6
4,160,746	+				-2.9
4,160,746	+				+1.1
4,160,746	+				-0.2
4,160,746	+				+1.3
4,160,747	-				-1.3
4,160,747	-				-0.1
4,160,747	-				+3.0
4,160,747	-				-2.1
4,160,747	-				+0.9
4,160,747	-				+1.0
4,160,747	-				-1.1