Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3225

Experiment: deoxycholate 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	deoxycholate 0.0125 M
3,729,302	+		Pf6N2E2_3223	0.68	+1.6
3,729,303	-		Pf6N2E2_3223	0.68	-2.6
3,729,330	+		Pf6N2E2_3223	0.72	+1.1
3,729,331	-		Pf6N2E2_3223	0.72	+0.4
3,729,331	-		Pf6N2E2_3223	0.72	-2.7
3,729,338	-		Pf6N2E2_3223	0.73	+0.2
3,729,507	-				-1.5
3,729,531	+				+1.4
3,729,531	+				-0.8
3,729,531	+				-0.6
3,729,532	-				-2.5
3,729,532	-				+1.6
3,729,532	-				+0.2
3,729,603	+				-0.1
3,729,604	-				+2.5
3,729,635	+				-3.1
3,729,659	+				-0.2
3,729,660	-				+1.8
3,729,660	-				-1.4
3,729,683	-		Pf6N2E2_3224	0.11	+1.2
3,729,712	-		Pf6N2E2_3224	0.18	-2.5
3,729,712	-		Pf6N2E2_3224	0.18	+0.4
3,729,713	+		Pf6N2E2_3224	0.18	+1.3
3,729,713	+		Pf6N2E2_3224	0.18	-1.1
3,729,714	-		Pf6N2E2_3224	0.19	+0.6
3,729,993	+		Pf6N2E2_3224	0.86	-3.4
3,730,103	-				-0.4
3,730,289	+				-1.4
3,730,290	-				-2.4
3,730,290	-				-1.6
3,730,441	-		Pf6N2E2_3225	0.20	-0.7
3,730,441	-		Pf6N2E2_3225	0.20	-0.3
3,730,441	-		Pf6N2E2_3225	0.20	+0.2
3,730,441	-		Pf6N2E2_3225	0.20	+1.6
3,730,441	-		Pf6N2E2_3225	0.20	-2.1
3,730,443	+		Pf6N2E2_3225	0.20	+1.0
3,730,443	+		Pf6N2E2_3225	0.20	-2.2
3,730,443	+		Pf6N2E2_3225	0.20	+1.4
3,730,443	+		Pf6N2E2_3225	0.20	+1.9
3,730,443	+		Pf6N2E2_3225	0.20	-1.1
3,730,443	+		Pf6N2E2_3225	0.20	-1.2
3,730,444	-		Pf6N2E2_3225	0.20	+1.4
3,730,444	-		Pf6N2E2_3225	0.20	+0.4
3,730,444	-		Pf6N2E2_3225	0.20	-0.3
3,730,624	+		Pf6N2E2_3225	0.37	+2.3
3,730,880	-		Pf6N2E2_3225	0.62	+2.6
3,730,951	+		Pf6N2E2_3225	0.68	+1.6
3,731,161	+		Pf6N2E2_3225	0.88	+0.5
3,731,161	+		Pf6N2E2_3225	0.88	+0.0
3,731,162	-		Pf6N2E2_3225	0.88	+0.7
3,731,199	-				-1.0
3,731,246	+				+1.2
3,731,247	-				+1.2
3,731,281	+				-1.6
3,731,282	-				-0.6
3,731,430	+				-1.7
3,731,430	+				+1.8
3,731,430	+				-1.5
3,731,431	-				-1.9
3,731,431	-				-1.1
3,731,431	-				+0.4
3,731,495	+		Pf6N2E2_3226	0.15	+1.6
3,731,495	+		Pf6N2E2_3226	0.15	-1.4
3,731,580	+		Pf6N2E2_3226	0.27	+1.7
3,731,580	+		Pf6N2E2_3226	0.27	-1.0
3,731,581	-		Pf6N2E2_3226	0.27	+1.3
3,731,581	-		Pf6N2E2_3226	0.27	-0.4
3,732,028	+				-1.0
3,732,029	-				+1.2
3,732,029	-				+1.0
3,732,106	+				+1.0
3,732,107	-				-0.7
3,732,113	-				+2.3
3,732,134	+				-1.3
3,732,134	+				-2.1
3,732,135	-				+1.7
3,732,136	+				+0.4
3,732,163	+				+0.7
3,732,163	+				+0.0
3,732,163	+				-0.8
3,732,164	-				-2.0
3,732,164	-				-0.3
3,732,164	-				+0.4
3,732,164	-				-2.2
3,732,165	+				-3.2
3,732,165	+				+1.4
3,732,165	+				+2.6
3,732,166	-				-1.8
3,732,166	-				+1.8
3,732,212	+				-0.8