Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2685

Experiment: deoxycholate 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	deoxycholate 0.0125 M
3,172,025	+		Pf6N2E2_2683	0.58	-2.6
3,172,025	+		Pf6N2E2_2683	0.58	-0.6
3,172,026	-		Pf6N2E2_2683	0.58	-3.0
3,172,052	+		Pf6N2E2_2683	0.61	+2.2
3,172,099	+		Pf6N2E2_2683	0.67	+0.9
3,172,099	+		Pf6N2E2_2683	0.67	+1.2
3,172,099	+		Pf6N2E2_2683	0.67	-2.9
3,172,100	-		Pf6N2E2_2683	0.67	+0.2
3,172,100	-		Pf6N2E2_2683	0.67	+0.8
3,172,100	-		Pf6N2E2_2683	0.67	+1.6
3,172,100	-		Pf6N2E2_2683	0.67	-2.8
3,172,100	-		Pf6N2E2_2683	0.67	+0.7
3,172,195	+		Pf6N2E2_2683	0.79	-0.9
3,172,195	+		Pf6N2E2_2683	0.79	+0.3
3,172,195	+		Pf6N2E2_2683	0.79	-0.5
3,172,195	+		Pf6N2E2_2683	0.79	+1.6
3,172,196	-		Pf6N2E2_2683	0.79	-1.3
3,172,196	-		Pf6N2E2_2683	0.79	+3.9
3,172,196	-		Pf6N2E2_2683	0.79	+0.6
3,172,196	-		Pf6N2E2_2683	0.79	+0.5
3,172,196	-		Pf6N2E2_2683	0.79	-1.9
3,172,222	+		Pf6N2E2_2683	0.82	-2.6
3,172,222	+		Pf6N2E2_2683	0.82	+1.4
3,172,222	+		Pf6N2E2_2683	0.82	+0.3
3,172,222	+		Pf6N2E2_2683	0.82	+1.8
3,172,222	+		Pf6N2E2_2683	0.82	+0.5
3,172,223	-		Pf6N2E2_2683	0.83	+2.3
3,172,223	-		Pf6N2E2_2683	0.83	-2.2
3,172,223	-		Pf6N2E2_2683	0.83	-2.5
3,172,233	-		Pf6N2E2_2683	0.84	+0.6
3,172,401	+				-0.7
3,172,401	+				+1.9
3,172,402	-				+1.5
3,172,402	-				+0.1
3,172,452	+		Pf6N2E2_2684	0.15	+2.5
3,172,452	+		Pf6N2E2_2684	0.15	-2.4
3,172,452	+		Pf6N2E2_2684	0.15	-0.4
3,172,452	+		Pf6N2E2_2684	0.15	-1.1
3,172,452	+		Pf6N2E2_2684	0.15	+0.0
3,172,452	+		Pf6N2E2_2684	0.15	-0.1
3,172,452	+		Pf6N2E2_2684	0.15	+1.3
3,172,452	+		Pf6N2E2_2684	0.15	-1.0
3,172,452	+		Pf6N2E2_2684	0.15	+1.3
3,172,452	+		Pf6N2E2_2684	0.15	-2.2
3,172,452	+		Pf6N2E2_2684	0.15	-1.3
3,172,452	+		Pf6N2E2_2684	0.15	+1.6
3,172,452	+		Pf6N2E2_2684	0.15	-2.6
3,172,453	-		Pf6N2E2_2684	0.15	+1.2
3,172,453	-		Pf6N2E2_2684	0.15	+0.3
3,172,453	-		Pf6N2E2_2684	0.15	+0.7
3,172,453	-		Pf6N2E2_2684	0.15	+0.1
3,172,453	-		Pf6N2E2_2684	0.15	-1.3
3,172,453	-		Pf6N2E2_2684	0.15	+0.1
3,172,453	-		Pf6N2E2_2684	0.15	+0.4
3,172,453	-		Pf6N2E2_2684	0.15	-1.4
3,172,453	-		Pf6N2E2_2684	0.15	+0.2
3,172,453	-		Pf6N2E2_2684	0.15	+1.3
3,172,453	-		Pf6N2E2_2684	0.15	-0.4
3,172,453	-		Pf6N2E2_2684	0.15	-1.4
3,172,453	-		Pf6N2E2_2684	0.15	+1.0
3,172,453	-		Pf6N2E2_2684	0.15	+0.3
3,172,453	-		Pf6N2E2_2684	0.15	-0.7
3,172,453	-		Pf6N2E2_2684	0.15	+0.8
3,172,517	-		Pf6N2E2_2684	0.27	+0.8
3,172,517	-		Pf6N2E2_2684	0.27	+0.4
3,172,517	-		Pf6N2E2_2684	0.27	+0.2
3,172,535	+		Pf6N2E2_2684	0.30	-3.2
3,172,535	+		Pf6N2E2_2684	0.30	-1.2
3,172,536	-		Pf6N2E2_2684	0.30	+2.4
3,172,536	-		Pf6N2E2_2684	0.30	-0.9
3,172,536	-		Pf6N2E2_2684	0.30	+3.2
3,172,536	-		Pf6N2E2_2684	0.30	-0.7
3,172,553	+		Pf6N2E2_2684	0.33	-2.7
3,172,553	+		Pf6N2E2_2684	0.33	-2.3
3,172,980	-				+1.6
3,173,011	-				-1.1
3,173,011	-				-1.0
3,173,011	-				+1.8
3,173,011	-				-1.8
3,173,048	-				-0.7
3,173,099	+				-0.1
3,173,099	+				+1.8
3,173,099	+				+0.9
3,173,099	+				-2.0
3,173,099	+				+1.8
3,173,100	-				-1.1
3,173,100	-				-1.9
3,173,100	-				-3.2
3,173,100	-				+1.1
3,173,100	-				-0.9
3,173,100	-				+0.0
3,173,105	+				-2.4
3,173,105	+				+1.0
3,173,105	+				+0.7
3,173,105	+				-3.3
3,173,106	-				+1.9
3,173,106	-				-0.3
3,173,106	-				+0.2
3,173,106	-				+1.4
3,173,106	-				+1.2
3,173,106	-				-1.2
3,173,106	-				-2.8
3,173,106	-				-2.1
3,173,108	+				+1.6
3,173,109	-				+0.2
3,173,193	-				+0.2
3,173,387	+		Pf6N2E2_2685	0.20	+0.7
3,173,387	+		Pf6N2E2_2685	0.20	+3.2
3,173,387	+		Pf6N2E2_2685	0.20	+1.5
3,173,388	-		Pf6N2E2_2685	0.20	+1.2
3,173,388	-		Pf6N2E2_2685	0.20	+1.6
3,173,388	-		Pf6N2E2_2685	0.20	+1.0
3,173,388	-		Pf6N2E2_2685	0.20	-1.3
3,173,388	-		Pf6N2E2_2685	0.20	+0.8
3,173,388	-		Pf6N2E2_2685	0.20	-0.8
3,173,388	-		Pf6N2E2_2685	0.20	+1.1
3,173,388	-		Pf6N2E2_2685	0.20	+1.6
3,173,388	-		Pf6N2E2_2685	0.20	-1.7
3,173,522	+		Pf6N2E2_2685	0.28	-3.4
3,173,522	+		Pf6N2E2_2685	0.28	+2.2
3,173,522	+		Pf6N2E2_2685	0.28	+1.9
3,173,522	+		Pf6N2E2_2685	0.28	+0.5
3,173,522	+		Pf6N2E2_2685	0.28	+0.7
3,173,523	-		Pf6N2E2_2685	0.28	+1.2
3,173,523	-		Pf6N2E2_2685	0.28	-2.6
3,173,523	-		Pf6N2E2_2685	0.28	-0.5
3,173,523	-		Pf6N2E2_2685	0.28	+0.2
3,173,600	+		Pf6N2E2_2685	0.32	+0.8
3,173,600	+		Pf6N2E2_2685	0.32	+1.0
3,173,601	-		Pf6N2E2_2685	0.32	+0.4
3,173,618	+		Pf6N2E2_2685	0.33	+2.1
3,173,618	+		Pf6N2E2_2685	0.33	-1.1
3,173,618	+		Pf6N2E2_2685	0.33	-0.2
3,173,619	-		Pf6N2E2_2685	0.33	+0.5
3,173,753	+		Pf6N2E2_2685	0.40	+1.5
3,173,754	-		Pf6N2E2_2685	0.40	+1.0
3,174,248	+		Pf6N2E2_2685	0.67	-3.1
3,174,249	-		Pf6N2E2_2685	0.67	+1.2
3,174,484	+		Pf6N2E2_2685	0.80	+0.8
3,174,797	+				-1.4
3,174,797	+				+0.2
3,174,797	+				+0.6
3,174,797	+				+0.4
3,174,797	+				+1.7
3,174,798	-				-0.9
3,174,798	-				-0.3
3,174,798	-				+1.9
3,174,798	-				+2.2
3,174,798	-				+1.2
3,174,798	-				-0.4
3,174,798	-				-1.8
3,174,798	-				+1.7
3,174,935	+				+1.2
3,175,023	+				+1.2
3,175,024	-				+1.4
3,175,024	-				+0.8
3,175,076	+				-0.0
3,175,076	+				-0.6
3,175,077	-				-0.1
3,175,083	+				-0.5
3,175,085	+				-1.4
3,175,085	+				+0.2
3,175,085	+				+1.1
3,175,085	+				-0.3
3,175,085	+				+0.7
3,175,085	+				-1.3
3,175,085	+				-1.3
3,175,085	+				+0.3
3,175,085	+				-0.2
3,175,085	+				-0.1
3,175,085	+				-1.0
3,175,085	+				-2.0
3,175,085	+				+1.1
3,175,085	+				-2.3
3,175,085	+				-0.2
3,175,086	-				-0.1
3,175,086	-				-0.2
3,175,086	-				+2.0
3,175,086	-				-1.0
3,175,086	-				+0.2
3,175,086	-				+0.4
3,175,086	-				+0.1
3,175,086	-				+0.9
3,175,086	-				-1.9
3,175,086	-				+0.5
3,175,086	-				+2.4
3,175,086	-				-0.9
3,175,096	+				+0.4
3,175,096	+				-1.9
3,175,096	+				-1.7
3,175,096	+				-0.7
3,175,097	-				+1.5
3,175,097	-				+0.2
3,175,097	-				+0.5
3,175,097	-				+0.5
3,175,097	-				-0.9
3,175,172	+				+0.0
3,175,173	-				+0.9
3,175,184	+				+0.1
3,175,184	+				-1.0
3,175,217	+				-1.8
3,175,269	+				+1.1
3,175,269	+				-2.5
3,175,269	+				+0.9
3,175,269	+				+1.3
3,175,269	+				+0.3
3,175,269	+				-0.0
3,175,269	+				-0.7
3,175,269	+				+0.1
3,175,269	+				+0.8
3,175,269	+				-2.3
3,175,269	+				+1.2
3,175,269	+				-2.3
3,175,270	-				+0.8
3,175,270	-				+0.2
3,175,270	-				-2.5
3,175,270	-				+3.3
3,175,270	-				+0.4
3,175,270	-				-2.6
3,175,270	-				-0.9
3,175,270	-				-0.1
3,175,270	-				+1.3
3,175,270	-				-1.7
3,175,270	-				-1.9
3,175,277	+				+0.3
3,175,277	+				-0.2
3,175,278	-				+1.1
3,175,309	-				+1.3
3,175,431	+		Pf6N2E2_2686	0.23	+0.8
3,175,431	+		Pf6N2E2_2686	0.23	+0.0
3,175,431	+		Pf6N2E2_2686	0.23	-1.2
3,175,432	-		Pf6N2E2_2686	0.23	-3.1
3,175,474	+		Pf6N2E2_2686	0.30	+1.1
3,175,475	-		Pf6N2E2_2686	0.30	-0.9
3,175,513	+		Pf6N2E2_2686	0.35	+1.6
3,175,513	+		Pf6N2E2_2686	0.35	-0.1
3,175,514	-		Pf6N2E2_2686	0.35	-0.7
3,175,561	+		Pf6N2E2_2686	0.42	-2.4
3,175,561	+		Pf6N2E2_2686	0.42	+0.4
3,175,561	+		Pf6N2E2_2686	0.42	-2.4
3,175,562	-		Pf6N2E2_2686	0.42	-1.8
3,175,562	-		Pf6N2E2_2686	0.42	-1.4
3,175,562	-		Pf6N2E2_2686	0.42	+1.4
3,175,649	-		Pf6N2E2_2686	0.55	+1.9
3,175,833	+		Pf6N2E2_2686	0.82	+1.8