Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2470

Experiment: deoxycholate 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2468 and Pf6N2E2_2469 are separated by 51 nucleotidesPf6N2E2_2469 and Pf6N2E2_2470 are separated by 16 nucleotidesPf6N2E2_2470 and Pf6N2E2_2471 are separated by 164 nucleotidesPf6N2E2_2471 and Pf6N2E2_2472 are separated by 202 nucleotides Pf6N2E2_2468 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 2,917,084 to 2,918,037 _2468 Pf6N2E2_2469 - hypothetical protein, at 2,918,089 to 2,918,289 _2469 Pf6N2E2_2470 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 2,918,306 to 2,919,382 _2470 Pf6N2E2_2471 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 2,919,547 to 2,919,828 _2471 Pf6N2E2_2472 - hypothetical protein, at 2,920,031 to 2,920,144 _2472 Position (kb) 2918 2919 2920Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2917.365 kb on + strand, within Pf6N2E2_2468at 2917.392 kb on + strand, within Pf6N2E2_2468at 2917.425 kb on - strand, within Pf6N2E2_2468at 2917.425 kb on - strand, within Pf6N2E2_2468at 2917.425 kb on - strand, within Pf6N2E2_2468at 2918.056 kb on - strandat 2918.073 kb on + strandat 2918.073 kb on + strandat 2918.073 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.107 kb on + strandat 2918.108 kb on - strandat 2918.108 kb on - strandat 2918.161 kb on + strand, within Pf6N2E2_2469at 2918.162 kb on - strand, within Pf6N2E2_2469at 2918.162 kb on - strand, within Pf6N2E2_2469at 2918.163 kb on + strand, within Pf6N2E2_2469at 2918.172 kb on - strand, within Pf6N2E2_2469at 2918.238 kb on - strand, within Pf6N2E2_2469at 2918.238 kb on - strand, within Pf6N2E2_2469at 2918.300 kb on - strandat 2918.333 kb on - strandat 2918.523 kb on - strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.570 kb on + strand, within Pf6N2E2_2470at 2918.571 kb on - strand, within Pf6N2E2_2470at 2918.571 kb on - strand, within Pf6N2E2_2470at 2918.588 kb on + strand, within Pf6N2E2_2470at 2918.588 kb on + strand, within Pf6N2E2_2470at 2918.588 kb on + strand, within Pf6N2E2_2470at 2918.589 kb on - strand, within Pf6N2E2_2470at 2918.642 kb on + strand, within Pf6N2E2_2470at 2918.642 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.762 kb on + strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.763 kb on - strand, within Pf6N2E2_2470at 2918.990 kb on + strand, within Pf6N2E2_2470at 2918.991 kb on - strand, within Pf6N2E2_2470at 2919.032 kb on + strand, within Pf6N2E2_2470at 2919.033 kb on - strand, within Pf6N2E2_2470at 2919.033 kb on - strand, within Pf6N2E2_2470at 2919.272 kb on + strand, within Pf6N2E2_2470at 2919.273 kb on - strand, within Pf6N2E2_2470at 2919.417 kb on + strandat 2919.417 kb on + strandat 2919.417 kb on + strandat 2919.417 kb on + strandat 2919.418 kb on - strandat 2919.418 kb on - strandat 2919.451 kb on + strandat 2919.451 kb on + strandat 2919.451 kb on + strandat 2919.451 kb on + strandat 2919.452 kb on - strandat 2919.452 kb on - strandat 2919.452 kb on - strandat 2919.452 kb on - strandat 2919.478 kb on + strandat 2919.495 kb on - strandat 2919.584 kb on + strand, within Pf6N2E2_2471at 2919.584 kb on + strand, within Pf6N2E2_2471at 2919.584 kb on + strand, within Pf6N2E2_2471at 2919.585 kb on - strand, within Pf6N2E2_2471at 2919.585 kb on - strand, within Pf6N2E2_2471at 2919.585 kb on - strand, within Pf6N2E2_2471at 2919.585 kb on - strand, within Pf6N2E2_2471at 2919.596 kb on + strand, within Pf6N2E2_2471at 2919.596 kb on + strand, within Pf6N2E2_2471at 2919.596 kb on + strand, within Pf6N2E2_2471at 2919.596 kb on + strand, within Pf6N2E2_2471at 2919.597 kb on - strand, within Pf6N2E2_2471at 2919.597 kb on - strand, within Pf6N2E2_2471at 2919.597 kb on - strand, within Pf6N2E2_2471at 2919.639 kb on - strand, within Pf6N2E2_2471at 2919.639 kb on - strand, within Pf6N2E2_2471at 2919.639 kb on - strand, within Pf6N2E2_2471at 2919.710 kb on + strand, within Pf6N2E2_2471at 2919.711 kb on - strand, within Pf6N2E2_2471at 2919.711 kb on - strand, within Pf6N2E2_2471at 2919.711 kb on - strand, within Pf6N2E2_2471at 2919.715 kb on - strand, within Pf6N2E2_2471at 2919.743 kb on + strand, within Pf6N2E2_2471at 2919.743 kb on + strand, within Pf6N2E2_2471at 2919.743 kb on + strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.744 kb on - strand, within Pf6N2E2_2471at 2919.753 kb on - strand, within Pf6N2E2_2471at 2919.832 kb on + strandat 2919.833 kb on - strandat 2919.861 kb on + strandat 2919.861 kb on + strandat 2919.867 kb on - strandat 2919.895 kb on + strandat 2919.895 kb on + strandat 2919.895 kb on + strandat 2919.895 kb on + strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.896 kb on - strandat 2919.965 kb on + strandat 2919.965 kb on + strandat 2919.965 kb on + strandat 2919.965 kb on + strandat 2919.966 kb on - strandat 2919.966 kb on - strandat 2919.966 kb on - strandat 2919.968 kb on + strandat 2919.968 kb on + strandat 2919.968 kb on + strandat 2919.968 kb on + strandat 2919.969 kb on - strandat 2920.059 kb on + strand, within Pf6N2E2_2472at 2920.060 kb on - strand, within Pf6N2E2_2472at 2920.077 kb on + strand, within Pf6N2E2_2472at 2920.078 kb on - strand, within Pf6N2E2_2472at 2920.121 kb on - strand, within Pf6N2E2_2472at 2920.124 kb on + strand, within Pf6N2E2_2472at 2920.125 kb on - strand, within Pf6N2E2_2472at 2920.139 kb on + strandat 2920.139 kb on + strandat 2920.140 kb on - strandat 2920.224 kb on + strandat 2920.224 kb on + strandat 2920.225 kb on - strandat 2920.373 kb on - strandat 2920.376 kb on + strandat 2920.376 kb on + strandat 2920.377 kb on - strandat 2920.379 kb on + strandat 2920.379 kb on + strandat 2920.379 kb on + strandat 2920.380 kb on - strandat 2920.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M
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2,917,365 + Pf6N2E2_2468 0.29 +1.1
2,917,392 + Pf6N2E2_2468 0.32 -1.6
2,917,425 - Pf6N2E2_2468 0.36 -0.3
2,917,425 - Pf6N2E2_2468 0.36 -0.1
2,917,425 - Pf6N2E2_2468 0.36 +0.1
2,918,056 - +0.7
2,918,073 + -0.5
2,918,073 + -2.4
2,918,073 + -1.1
2,918,107 + +0.3
2,918,107 + -2.6
2,918,107 + -0.5
2,918,107 + -1.6
2,918,107 + -1.5
2,918,107 + +0.5
2,918,107 + -0.3
2,918,107 + +0.8
2,918,108 - -2.3
2,918,108 - +1.1
2,918,161 + Pf6N2E2_2469 0.36 +2.3
2,918,162 - Pf6N2E2_2469 0.36 -3.3
2,918,162 - Pf6N2E2_2469 0.36 -3.6
2,918,163 + Pf6N2E2_2469 0.37 +0.6
2,918,172 - Pf6N2E2_2469 0.41 -3.2
2,918,238 - Pf6N2E2_2469 0.74 -2.8
2,918,238 - Pf6N2E2_2469 0.74 +0.7
2,918,300 - -1.7
2,918,333 - -0.2
2,918,523 - Pf6N2E2_2470 0.20 -1.9
2,918,570 + Pf6N2E2_2470 0.25 -0.6
2,918,570 + Pf6N2E2_2470 0.25 -0.3
2,918,570 + Pf6N2E2_2470 0.25 -2.4
2,918,570 + Pf6N2E2_2470 0.25 +1.1
2,918,571 - Pf6N2E2_2470 0.25 +0.4
2,918,571 - Pf6N2E2_2470 0.25 -2.0
2,918,588 + Pf6N2E2_2470 0.26 -1.7
2,918,588 + Pf6N2E2_2470 0.26 -0.1
2,918,588 + Pf6N2E2_2470 0.26 -1.0
2,918,589 - Pf6N2E2_2470 0.26 -3.1
2,918,642 + Pf6N2E2_2470 0.31 +0.3
2,918,642 + Pf6N2E2_2470 0.31 -2.6
2,918,762 + Pf6N2E2_2470 0.42 -2.0
2,918,762 + Pf6N2E2_2470 0.42 -2.9
2,918,762 + Pf6N2E2_2470 0.42 +1.3
2,918,762 + Pf6N2E2_2470 0.42 +1.0
2,918,763 - Pf6N2E2_2470 0.42 +2.1
2,918,763 - Pf6N2E2_2470 0.42 +1.1
2,918,763 - Pf6N2E2_2470 0.42 -3.6
2,918,763 - Pf6N2E2_2470 0.42 -0.6
2,918,990 + Pf6N2E2_2470 0.64 +1.8
2,918,991 - Pf6N2E2_2470 0.64 +2.7
2,919,032 + Pf6N2E2_2470 0.67 +0.9
2,919,033 - Pf6N2E2_2470 0.68 -3.1
2,919,033 - Pf6N2E2_2470 0.68 -2.1
2,919,272 + Pf6N2E2_2470 0.90 -0.4
2,919,273 - Pf6N2E2_2470 0.90 -0.2
2,919,417 + -2.2
2,919,417 + -1.6
2,919,417 + -0.0
2,919,417 + -3.0
2,919,418 - -3.3
2,919,418 - -2.2
2,919,451 + -3.4
2,919,451 + -1.2
2,919,451 + +0.4
2,919,451 + +0.5
2,919,452 - -0.9
2,919,452 - -3.4
2,919,452 - -3.9
2,919,452 - +0.5
2,919,478 + -2.3
2,919,495 - -2.6
2,919,584 + Pf6N2E2_2471 0.13 -0.7
2,919,584 + Pf6N2E2_2471 0.13 -0.2
2,919,584 + Pf6N2E2_2471 0.13 -1.6
2,919,585 - Pf6N2E2_2471 0.13 -2.6
2,919,585 - Pf6N2E2_2471 0.13 -3.7
2,919,585 - Pf6N2E2_2471 0.13 -0.8
2,919,585 - Pf6N2E2_2471 0.13 -3.2
2,919,596 + Pf6N2E2_2471 0.17 -3.8
2,919,596 + Pf6N2E2_2471 0.17 +1.4
2,919,596 + Pf6N2E2_2471 0.17 +1.6
2,919,596 + Pf6N2E2_2471 0.17 -2.1
2,919,597 - Pf6N2E2_2471 0.18 -0.6
2,919,597 - Pf6N2E2_2471 0.18 -2.1
2,919,597 - Pf6N2E2_2471 0.18 -2.5
2,919,639 - Pf6N2E2_2471 0.33 -3.8
2,919,639 - Pf6N2E2_2471 0.33 -2.3
2,919,639 - Pf6N2E2_2471 0.33 -2.2
2,919,710 + Pf6N2E2_2471 0.58 +2.5
2,919,711 - Pf6N2E2_2471 0.58 -3.3
2,919,711 - Pf6N2E2_2471 0.58 -2.9
2,919,711 - Pf6N2E2_2471 0.58 -2.2
2,919,715 - Pf6N2E2_2471 0.60 -3.1
2,919,743 + Pf6N2E2_2471 0.70 -1.9
2,919,743 + Pf6N2E2_2471 0.70 +0.7
2,919,743 + Pf6N2E2_2471 0.70 -2.3
2,919,744 - Pf6N2E2_2471 0.70 -2.6
2,919,744 - Pf6N2E2_2471 0.70 -3.3
2,919,744 - Pf6N2E2_2471 0.70 -2.3
2,919,744 - Pf6N2E2_2471 0.70 -3.2
2,919,744 - Pf6N2E2_2471 0.70 -3.4
2,919,744 - Pf6N2E2_2471 0.70 -1.0
2,919,744 - Pf6N2E2_2471 0.70 -3.0
2,919,744 - Pf6N2E2_2471 0.70 -2.1
2,919,744 - Pf6N2E2_2471 0.70 -0.2
2,919,744 - Pf6N2E2_2471 0.70 -3.5
2,919,753 - Pf6N2E2_2471 0.73 -2.9
2,919,832 + -2.6
2,919,833 - -2.3
2,919,861 + -1.7
2,919,861 + +2.9
2,919,867 - -3.1
2,919,895 + -1.0
2,919,895 + +2.3
2,919,895 + +2.3
2,919,895 + -3.0
2,919,896 - -2.6
2,919,896 - -3.3
2,919,896 - -1.9
2,919,896 - -3.6
2,919,896 - -1.6
2,919,896 - -3.8
2,919,896 - -2.6
2,919,896 - -0.5
2,919,896 - -2.9
2,919,965 + -2.2
2,919,965 + -1.4
2,919,965 + +0.6
2,919,965 + +1.0
2,919,966 - -3.8
2,919,966 - -2.6
2,919,966 - -3.3
2,919,968 + +0.6
2,919,968 + -2.7
2,919,968 + -0.3
2,919,968 + -0.2
2,919,969 - -1.9
2,920,059 + Pf6N2E2_2472 0.25 -3.8
2,920,060 - Pf6N2E2_2472 0.25 -3.1
2,920,077 + Pf6N2E2_2472 0.40 -1.2
2,920,078 - Pf6N2E2_2472 0.41 -3.0
2,920,121 - Pf6N2E2_2472 0.79 -2.3
2,920,124 + Pf6N2E2_2472 0.82 -1.7
2,920,125 - Pf6N2E2_2472 0.82 -2.6
2,920,139 + -2.5
2,920,139 + +0.0
2,920,140 - -2.8
2,920,224 + -1.6
2,920,224 + +0.8
2,920,225 - -2.7
2,920,373 - -2.8
2,920,376 + -3.2
2,920,376 + -2.6
2,920,377 - -4.1
2,920,379 + -3.8
2,920,379 + -3.4
2,920,379 + -2.7
2,920,380 - -2.9
2,920,380 - -2.2

Or see this region's nucleotide sequence