Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2470

Experiment: deoxycholate 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	deoxycholate 0.0125 M
2,917,365	+		Pf6N2E2_2468	0.29	+1.1
2,917,392	+		Pf6N2E2_2468	0.32	-1.6
2,917,425	-		Pf6N2E2_2468	0.36	-0.3
2,917,425	-		Pf6N2E2_2468	0.36	-0.1
2,917,425	-		Pf6N2E2_2468	0.36	+0.1
2,918,056	-				+0.7
2,918,073	+				-0.5
2,918,073	+				-2.4
2,918,073	+				-1.1
2,918,107	+				+0.3
2,918,107	+				-2.6
2,918,107	+				-0.5
2,918,107	+				-1.6
2,918,107	+				-1.5
2,918,107	+				+0.5
2,918,107	+				-0.3
2,918,107	+				+0.8
2,918,108	-				-2.3
2,918,108	-				+1.1
2,918,161	+		Pf6N2E2_2469	0.36	+2.3
2,918,162	-		Pf6N2E2_2469	0.36	-3.3
2,918,162	-		Pf6N2E2_2469	0.36	-3.6
2,918,163	+		Pf6N2E2_2469	0.37	+0.6
2,918,172	-		Pf6N2E2_2469	0.41	-3.2
2,918,238	-		Pf6N2E2_2469	0.74	-2.8
2,918,238	-		Pf6N2E2_2469	0.74	+0.7
2,918,300	-				-1.7
2,918,333	-				-0.2
2,918,523	-		Pf6N2E2_2470	0.20	-1.9
2,918,570	+		Pf6N2E2_2470	0.25	-0.6
2,918,570	+		Pf6N2E2_2470	0.25	-0.3
2,918,570	+		Pf6N2E2_2470	0.25	-2.4
2,918,570	+		Pf6N2E2_2470	0.25	+1.1
2,918,571	-		Pf6N2E2_2470	0.25	+0.4
2,918,571	-		Pf6N2E2_2470	0.25	-2.0
2,918,588	+		Pf6N2E2_2470	0.26	-1.7
2,918,588	+		Pf6N2E2_2470	0.26	-0.1
2,918,588	+		Pf6N2E2_2470	0.26	-1.0
2,918,589	-		Pf6N2E2_2470	0.26	-3.1
2,918,642	+		Pf6N2E2_2470	0.31	+0.3
2,918,642	+		Pf6N2E2_2470	0.31	-2.6
2,918,762	+		Pf6N2E2_2470	0.42	-2.0
2,918,762	+		Pf6N2E2_2470	0.42	-2.9
2,918,762	+		Pf6N2E2_2470	0.42	+1.3
2,918,762	+		Pf6N2E2_2470	0.42	+1.0
2,918,763	-		Pf6N2E2_2470	0.42	+2.1
2,918,763	-		Pf6N2E2_2470	0.42	+1.1
2,918,763	-		Pf6N2E2_2470	0.42	-3.6
2,918,763	-		Pf6N2E2_2470	0.42	-0.6
2,918,990	+		Pf6N2E2_2470	0.64	+1.8
2,918,991	-		Pf6N2E2_2470	0.64	+2.7
2,919,032	+		Pf6N2E2_2470	0.67	+0.9
2,919,033	-		Pf6N2E2_2470	0.68	-3.1
2,919,033	-		Pf6N2E2_2470	0.68	-2.1
2,919,272	+		Pf6N2E2_2470	0.90	-0.4
2,919,273	-		Pf6N2E2_2470	0.90	-0.2
2,919,417	+				-2.2
2,919,417	+				-1.6
2,919,417	+				-0.0
2,919,417	+				-3.0
2,919,418	-				-3.3
2,919,418	-				-2.2
2,919,451	+				-3.4
2,919,451	+				-1.2
2,919,451	+				+0.4
2,919,451	+				+0.5
2,919,452	-				-0.9
2,919,452	-				-3.4
2,919,452	-				-3.9
2,919,452	-				+0.5
2,919,478	+				-2.3
2,919,495	-				-2.6
2,919,584	+		Pf6N2E2_2471	0.13	-0.7
2,919,584	+		Pf6N2E2_2471	0.13	-0.2
2,919,584	+		Pf6N2E2_2471	0.13	-1.6
2,919,585	-		Pf6N2E2_2471	0.13	-2.6
2,919,585	-		Pf6N2E2_2471	0.13	-3.7
2,919,585	-		Pf6N2E2_2471	0.13	-0.8
2,919,585	-		Pf6N2E2_2471	0.13	-3.2
2,919,596	+		Pf6N2E2_2471	0.17	-3.8
2,919,596	+		Pf6N2E2_2471	0.17	+1.4
2,919,596	+		Pf6N2E2_2471	0.17	+1.6
2,919,596	+		Pf6N2E2_2471	0.17	-2.1
2,919,597	-		Pf6N2E2_2471	0.18	-0.6
2,919,597	-		Pf6N2E2_2471	0.18	-2.1
2,919,597	-		Pf6N2E2_2471	0.18	-2.5
2,919,639	-		Pf6N2E2_2471	0.33	-3.8
2,919,639	-		Pf6N2E2_2471	0.33	-2.3
2,919,639	-		Pf6N2E2_2471	0.33	-2.2
2,919,710	+		Pf6N2E2_2471	0.58	+2.5
2,919,711	-		Pf6N2E2_2471	0.58	-3.3
2,919,711	-		Pf6N2E2_2471	0.58	-2.9
2,919,711	-		Pf6N2E2_2471	0.58	-2.2
2,919,715	-		Pf6N2E2_2471	0.60	-3.1
2,919,743	+		Pf6N2E2_2471	0.70	-1.9
2,919,743	+		Pf6N2E2_2471	0.70	+0.7
2,919,743	+		Pf6N2E2_2471	0.70	-2.3
2,919,744	-		Pf6N2E2_2471	0.70	-2.6
2,919,744	-		Pf6N2E2_2471	0.70	-3.3
2,919,744	-		Pf6N2E2_2471	0.70	-2.3
2,919,744	-		Pf6N2E2_2471	0.70	-3.2
2,919,744	-		Pf6N2E2_2471	0.70	-3.4
2,919,744	-		Pf6N2E2_2471	0.70	-1.0
2,919,744	-		Pf6N2E2_2471	0.70	-3.0
2,919,744	-		Pf6N2E2_2471	0.70	-2.1
2,919,744	-		Pf6N2E2_2471	0.70	-0.2
2,919,744	-		Pf6N2E2_2471	0.70	-3.5
2,919,753	-		Pf6N2E2_2471	0.73	-2.9
2,919,832	+				-2.6
2,919,833	-				-2.3
2,919,861	+				-1.7
2,919,861	+				+2.9
2,919,867	-				-3.1
2,919,895	+				-1.0
2,919,895	+				+2.3
2,919,895	+				+2.3
2,919,895	+				-3.0
2,919,896	-				-2.6
2,919,896	-				-3.3
2,919,896	-				-1.9
2,919,896	-				-3.6
2,919,896	-				-1.6
2,919,896	-				-3.8
2,919,896	-				-2.6
2,919,896	-				-0.5
2,919,896	-				-2.9
2,919,965	+				-2.2
2,919,965	+				-1.4
2,919,965	+				+0.6
2,919,965	+				+1.0
2,919,966	-				-3.8
2,919,966	-				-2.6
2,919,966	-				-3.3
2,919,968	+				+0.6
2,919,968	+				-2.7
2,919,968	+				-0.3
2,919,968	+				-0.2
2,919,969	-				-1.9
2,920,059	+		Pf6N2E2_2472	0.25	-3.8
2,920,060	-		Pf6N2E2_2472	0.25	-3.1
2,920,077	+		Pf6N2E2_2472	0.40	-1.2
2,920,078	-		Pf6N2E2_2472	0.41	-3.0
2,920,121	-		Pf6N2E2_2472	0.79	-2.3
2,920,124	+		Pf6N2E2_2472	0.82	-1.7
2,920,125	-		Pf6N2E2_2472	0.82	-2.6
2,920,139	+				-2.5
2,920,139	+				+0.0
2,920,140	-				-2.8
2,920,224	+				-1.6
2,920,224	+				+0.8
2,920,225	-				-2.7
2,920,373	-				-2.8
2,920,376	+				-3.2
2,920,376	+				-2.6
2,920,377	-				-4.1
2,920,379	+				-3.8
2,920,379	+				-3.4
2,920,379	+				-2.7
2,920,380	-				-2.9
2,920,380	-				-2.2