Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2000

Experiment: deoxycholate 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	deoxycholate 0.0125 M
2,366,893	-		Pf6N2E2_1999	0.76	-2.8
2,366,893	-		Pf6N2E2_1999	0.76	+2.2
2,366,893	-		Pf6N2E2_1999	0.76	+0.5
2,367,044	-		Pf6N2E2_1999	0.86	+1.2
2,367,081	+		Pf6N2E2_1999	0.89	+1.0
2,367,081	+		Pf6N2E2_1999	0.89	-1.4
2,367,082	-		Pf6N2E2_1999	0.89	+0.4
2,367,082	-		Pf6N2E2_1999	0.89	-0.4
2,367,082	-		Pf6N2E2_1999	0.89	-0.2
2,367,082	-		Pf6N2E2_1999	0.89	-0.0
2,367,107	-				+0.4
2,367,110	-				-2.0
2,367,142	+				+2.1
2,367,142	+				-2.4
2,367,143	-				+0.3
2,367,176	+				-0.9
2,367,177	-				+1.4
2,367,177	-				-2.7
2,367,177	-				+0.8
2,367,182	+				-3.2
2,367,182	+				-0.0
2,367,182	+				+0.6
2,367,183	-				-2.6
2,367,185	+				+1.2
2,367,185	+				+1.6
2,367,186	-				+2.1
2,367,188	+				+0.5
2,367,188	+				+2.8
2,367,189	-				-0.4
2,367,189	-				-1.4
2,367,234	-				+1.9
2,367,242	+				+1.8
2,367,246	+				-3.1
2,367,247	-				-1.4
2,367,285	+				-3.2
2,367,286	-				+0.7
2,367,286	-				+0.3
2,367,286	-				+1.2
2,367,305	+				-1.1
2,367,305	+				+1.5
2,367,305	+				-2.9
2,367,306	-				+0.2
2,367,320	+				+0.8
2,367,320	+				+0.5
2,367,412	+				+1.4
2,367,412	+				+0.7
2,367,434	-				-1.7
2,367,448	+				+1.3
2,367,475	-				+0.3
2,367,475	-				+1.9
2,367,511	-				+2.6
2,367,544	-				-0.0
2,367,544	-				+1.1
2,367,554	-				-1.2
2,367,554	-				+0.7
2,367,610	-				-1.4
2,367,629	+				+1.8
2,367,629	+				+1.0
2,367,629	+				+0.6
2,367,629	+				+1.0
2,367,630	-				+0.6
2,367,630	-				+2.2
2,367,649	-				+1.9
2,367,684	+				+2.0
2,367,709	-				-1.2
2,367,709	-				+3.7
2,367,716	-				-0.7
2,367,730	+				+1.9
2,367,976	+				+0.6
2,367,977	-				-0.2
2,367,977	-				+0.6
2,367,977	-				-1.4
2,367,977	-				-1.7
2,367,977	-				-2.7
2,368,024	-		Pf6N2E2_2000	0.10	+1.0
2,368,137	+		Pf6N2E2_2000	0.16	-2.2
2,368,138	-		Pf6N2E2_2000	0.17	-0.6
2,368,145	-		Pf6N2E2_2000	0.17	-1.6
2,368,234	-		Pf6N2E2_2000	0.22	+0.6
2,368,270	+		Pf6N2E2_2000	0.24	-1.6
2,368,271	-		Pf6N2E2_2000	0.24	-3.1
2,368,288	-		Pf6N2E2_2000	0.25	+0.2
2,368,288	-		Pf6N2E2_2000	0.25	+1.9
2,368,456	+		Pf6N2E2_2000	0.34	-1.0
2,368,457	-		Pf6N2E2_2000	0.34	-1.6
2,368,571	+		Pf6N2E2_2000	0.40	-1.6
2,368,610	+		Pf6N2E2_2000	0.42	+1.0
2,368,611	-		Pf6N2E2_2000	0.42	-1.9
2,368,611	-		Pf6N2E2_2000	0.42	+1.0
2,368,716	-		Pf6N2E2_2000	0.48	-1.0
2,368,736	-		Pf6N2E2_2000	0.49	-1.9
2,368,896	-		Pf6N2E2_2000	0.58	-3.2
2,368,896	-		Pf6N2E2_2000	0.58	+0.5
2,368,976	-		Pf6N2E2_2000	0.62	-1.4
2,369,016	-		Pf6N2E2_2000	0.64	-0.4
2,369,016	-		Pf6N2E2_2000	0.64	-0.3
2,369,016	-		Pf6N2E2_2000	0.64	+1.5
2,369,016	-		Pf6N2E2_2000	0.64	-2.7
2,369,303	+		Pf6N2E2_2000	0.80	+0.7
2,369,304	-		Pf6N2E2_2000	0.80	+3.2
2,369,304	-		Pf6N2E2_2000	0.80	-2.8
2,369,333	+		Pf6N2E2_2000	0.81	-1.0
2,369,333	+		Pf6N2E2_2000	0.81	-1.0
2,369,333	+		Pf6N2E2_2000	0.81	+0.6
2,369,334	-		Pf6N2E2_2000	0.81	-2.0
2,369,334	-		Pf6N2E2_2000	0.81	-1.6
2,369,334	-		Pf6N2E2_2000	0.81	-0.7
2,369,334	-		Pf6N2E2_2000	0.81	-0.2
2,369,334	-		Pf6N2E2_2000	0.81	-1.0
2,369,334	-		Pf6N2E2_2000	0.81	-1.7
2,369,334	-		Pf6N2E2_2000	0.81	-2.6
2,369,352	+		Pf6N2E2_2000	0.82	+1.3
2,369,352	+		Pf6N2E2_2000	0.82	-2.5
2,369,353	-		Pf6N2E2_2000	0.82	-2.2
2,369,377	+		Pf6N2E2_2000	0.84	-0.0
2,369,378	-		Pf6N2E2_2000	0.84	+1.6
2,369,378	-		Pf6N2E2_2000	0.84	+2.3
2,369,382	+		Pf6N2E2_2000	0.84	+1.6
2,369,382	+		Pf6N2E2_2000	0.84	+0.8
2,369,504	+				-1.6
2,369,611	-				-2.4
2,369,716	+				-2.5
2,369,716	+				-1.7
2,369,717	-				-0.3
2,369,746	-				-0.5
2,369,746	-				+1.0
2,369,746	-				-1.0
2,369,848	+				+0.6
2,369,871	+				+2.2
2,369,935	-				-0.9
2,369,949	+				-0.2
2,369,950	-				+0.9
2,369,950	-				+0.6
2,369,950	-				+0.0
2,370,035	-				-0.9
2,370,157	+				-1.1
2,370,202	+				+0.7
2,370,202	+				-2.7
2,370,202	+				-1.5
2,370,202	+				-2.9
2,370,203	-				+0.7
2,370,203	-				-2.8
2,370,203	-				-0.0
2,370,209	-				-0.4
2,370,254	-				+0.4
2,370,345	+				-2.2
2,370,346	-				+0.9
2,370,346	-				-0.3
2,370,388	+		Pf6N2E2_2001	0.13	+0.4
2,370,388	+		Pf6N2E2_2001	0.13	+1.6
2,370,389	-		Pf6N2E2_2001	0.13	-1.9
2,370,457	+		Pf6N2E2_2001	0.20	-1.3
2,370,477	-		Pf6N2E2_2001	0.22	+1.0
2,370,562	+		Pf6N2E2_2001	0.30	+0.7
2,370,583	+		Pf6N2E2_2001	0.32	-3.0
2,370,583	+		Pf6N2E2_2001	0.32	+1.1
2,370,584	-		Pf6N2E2_2001	0.32	-0.9
2,370,611	+		Pf6N2E2_2001	0.35	+0.4