Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1069

Experiment: deoxycholate 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1068 and Pf6N2E2_1069 are separated by 294 nucleotidesPf6N2E2_1069 and Pf6N2E2_1070 are separated by 471 nucleotides Pf6N2E2_1068 - outer membrane autotransporter, at 1,245,837 to 1,246,751 _1068 Pf6N2E2_1069 - autotransporter, at 1,247,046 to 1,249,421 _1069 Pf6N2E2_1070 - Endonuclease/Exonuclease/phosphatase family protein, at 1,249,893 to 1,250,693 _1070 Position (kb) 1247 1248 1249 1250Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1246.069 kb on + strand, within Pf6N2E2_1068at 1246.070 kb on - strand, within Pf6N2E2_1068at 1246.070 kb on - strand, within Pf6N2E2_1068at 1246.099 kb on + strand, within Pf6N2E2_1068at 1246.099 kb on + strand, within Pf6N2E2_1068at 1246.100 kb on - strand, within Pf6N2E2_1068at 1246.100 kb on - strand, within Pf6N2E2_1068at 1246.100 kb on - strand, within Pf6N2E2_1068at 1246.100 kb on - strand, within Pf6N2E2_1068at 1246.103 kb on + strand, within Pf6N2E2_1068at 1246.104 kb on - strand, within Pf6N2E2_1068at 1246.104 kb on - strand, within Pf6N2E2_1068at 1246.104 kb on - strand, within Pf6N2E2_1068at 1246.325 kb on - strand, within Pf6N2E2_1068at 1246.627 kb on + strand, within Pf6N2E2_1068at 1246.888 kb on - strandat 1246.903 kb on - strandat 1246.903 kb on - strandat 1246.909 kb on + strandat 1246.910 kb on - strandat 1247.048 kb on - strandat 1247.062 kb on - strandat 1247.115 kb on - strandat 1247.116 kb on + strandat 1247.116 kb on + strandat 1247.116 kb on + strandat 1247.116 kb on + strandat 1247.116 kb on + strandat 1247.117 kb on - strandat 1247.117 kb on - strandat 1247.117 kb on - strandat 1247.131 kb on + strandat 1247.229 kb on + strandat 1247.230 kb on - strandat 1247.230 kb on - strandat 1247.255 kb on + strandat 1247.256 kb on - strandat 1247.256 kb on - strandat 1247.279 kb on - strandat 1247.413 kb on + strand, within Pf6N2E2_1069at 1247.414 kb on - strand, within Pf6N2E2_1069at 1247.414 kb on - strand, within Pf6N2E2_1069at 1247.608 kb on + strand, within Pf6N2E2_1069at 1247.609 kb on - strand, within Pf6N2E2_1069at 1247.637 kb on + strand, within Pf6N2E2_1069at 1247.637 kb on + strand, within Pf6N2E2_1069at 1247.637 kb on + strand, within Pf6N2E2_1069at 1247.637 kb on + strand, within Pf6N2E2_1069at 1247.637 kb on + strand, within Pf6N2E2_1069at 1247.637 kb on + strand, within Pf6N2E2_1069at 1247.638 kb on - strand, within Pf6N2E2_1069at 1247.638 kb on - strand, within Pf6N2E2_1069at 1247.638 kb on - strand, within Pf6N2E2_1069at 1247.638 kb on - strand, within Pf6N2E2_1069at 1247.759 kb on - strand, within Pf6N2E2_1069at 1247.759 kb on - strand, within Pf6N2E2_1069at 1247.760 kb on + strand, within Pf6N2E2_1069at 1247.760 kb on + strand, within Pf6N2E2_1069at 1247.761 kb on - strand, within Pf6N2E2_1069at 1247.761 kb on - strand, within Pf6N2E2_1069at 1247.761 kb on - strand, within Pf6N2E2_1069at 1247.761 kb on - strand, within Pf6N2E2_1069at 1247.761 kb on - strand, within Pf6N2E2_1069at 1247.761 kb on - strand, within Pf6N2E2_1069at 1247.761 kb on - strand, within Pf6N2E2_1069at 1247.831 kb on + strand, within Pf6N2E2_1069at 1247.831 kb on + strand, within Pf6N2E2_1069at 1247.832 kb on - strand, within Pf6N2E2_1069at 1247.841 kb on + strand, within Pf6N2E2_1069at 1247.995 kb on + strand, within Pf6N2E2_1069at 1248.130 kb on + strand, within Pf6N2E2_1069at 1248.321 kb on - strand, within Pf6N2E2_1069at 1248.321 kb on - strand, within Pf6N2E2_1069at 1248.421 kb on + strand, within Pf6N2E2_1069at 1248.421 kb on + strand, within Pf6N2E2_1069at 1248.421 kb on + strand, within Pf6N2E2_1069at 1248.421 kb on + strand, within Pf6N2E2_1069at 1248.421 kb on + strand, within Pf6N2E2_1069at 1248.421 kb on + strand, within Pf6N2E2_1069at 1248.421 kb on + strand, within Pf6N2E2_1069at 1248.422 kb on - strand, within Pf6N2E2_1069at 1248.422 kb on - strand, within Pf6N2E2_1069at 1248.422 kb on - strand, within Pf6N2E2_1069at 1248.477 kb on + strand, within Pf6N2E2_1069at 1248.477 kb on + strand, within Pf6N2E2_1069at 1248.477 kb on + strand, within Pf6N2E2_1069at 1248.477 kb on + strand, within Pf6N2E2_1069at 1248.621 kb on - strand, within Pf6N2E2_1069at 1249.136 kb on + strand, within Pf6N2E2_1069at 1249.378 kb on + strandat 1249.378 kb on + strandat 1249.378 kb on + strandat 1249.378 kb on + strandat 1249.378 kb on + strandat 1249.379 kb on - strandat 1249.379 kb on - strandat 1249.379 kb on - strandat 1249.490 kb on + strandat 1249.533 kb on + strandat 1249.596 kb on + strandat 1249.611 kb on + strandat 1249.611 kb on + strandat 1249.611 kb on + strandat 1249.611 kb on + strandat 1249.612 kb on - strandat 1249.612 kb on - strandat 1249.647 kb on + strandat 1249.648 kb on - strandat 1249.648 kb on - strandat 1249.686 kb on + strandat 1249.707 kb on + strandat 1249.707 kb on + strandat 1249.707 kb on + strandat 1249.707 kb on + strandat 1249.887 kb on + strandat 1249.887 kb on + strandat 1249.887 kb on + strandat 1249.894 kb on + strandat 1249.993 kb on + strand, within Pf6N2E2_1070at 1249.994 kb on - strand, within Pf6N2E2_1070at 1249.994 kb on - strand, within Pf6N2E2_1070at 1249.994 kb on - strand, within Pf6N2E2_1070at 1249.997 kb on + strand, within Pf6N2E2_1070at 1249.997 kb on + strand, within Pf6N2E2_1070at 1249.997 kb on + strand, within Pf6N2E2_1070at 1249.997 kb on + strand, within Pf6N2E2_1070at 1249.997 kb on + strand, within Pf6N2E2_1070at 1249.998 kb on - strand, within Pf6N2E2_1070at 1249.998 kb on - strand, within Pf6N2E2_1070at 1249.998 kb on - strand, within Pf6N2E2_1070at 1249.998 kb on - strand, within Pf6N2E2_1070at 1250.032 kb on + strand, within Pf6N2E2_1070at 1250.033 kb on - strand, within Pf6N2E2_1070at 1250.080 kb on + strand, within Pf6N2E2_1070at 1250.081 kb on - strand, within Pf6N2E2_1070

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Per-strain Table

Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M
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1,246,069 + Pf6N2E2_1068 0.25 -1.0
1,246,070 - Pf6N2E2_1068 0.25 -0.8
1,246,070 - Pf6N2E2_1068 0.25 -2.6
1,246,099 + Pf6N2E2_1068 0.29 +1.7
1,246,099 + Pf6N2E2_1068 0.29 +1.2
1,246,100 - Pf6N2E2_1068 0.29 -1.6
1,246,100 - Pf6N2E2_1068 0.29 -0.4
1,246,100 - Pf6N2E2_1068 0.29 -2.5
1,246,100 - Pf6N2E2_1068 0.29 +2.2
1,246,103 + Pf6N2E2_1068 0.29 +1.2
1,246,104 - Pf6N2E2_1068 0.29 +1.9
1,246,104 - Pf6N2E2_1068 0.29 +0.5
1,246,104 - Pf6N2E2_1068 0.29 +1.3
1,246,325 - Pf6N2E2_1068 0.53 +0.4
1,246,627 + Pf6N2E2_1068 0.86 -2.4
1,246,888 - -1.1
1,246,903 - -0.1
1,246,903 - +0.9
1,246,909 + +2.1
1,246,910 - -0.9
1,247,048 - -1.1
1,247,062 - +0.2
1,247,115 - +0.9
1,247,116 + +1.2
1,247,116 + -0.9
1,247,116 + +2.5
1,247,116 + +1.4
1,247,116 + +2.1
1,247,117 - +1.0
1,247,117 - -2.4
1,247,117 - +1.4
1,247,131 + +0.4
1,247,229 + -1.6
1,247,230 - +0.6
1,247,230 - -0.4
1,247,255 + -0.6
1,247,256 - +0.2
1,247,256 - -0.6
1,247,279 - +0.5
1,247,413 + Pf6N2E2_1069 0.15 +1.0
1,247,414 - Pf6N2E2_1069 0.15 +1.9
1,247,414 - Pf6N2E2_1069 0.15 -1.5
1,247,608 + Pf6N2E2_1069 0.24 +0.1
1,247,609 - Pf6N2E2_1069 0.24 +1.0
1,247,637 + Pf6N2E2_1069 0.25 -1.3
1,247,637 + Pf6N2E2_1069 0.25 -0.9
1,247,637 + Pf6N2E2_1069 0.25 +0.6
1,247,637 + Pf6N2E2_1069 0.25 +2.1
1,247,637 + Pf6N2E2_1069 0.25 -1.9
1,247,637 + Pf6N2E2_1069 0.25 -2.3
1,247,638 - Pf6N2E2_1069 0.25 +2.8
1,247,638 - Pf6N2E2_1069 0.25 +1.1
1,247,638 - Pf6N2E2_1069 0.25 -0.3
1,247,638 - Pf6N2E2_1069 0.25 +0.9
1,247,759 - Pf6N2E2_1069 0.30 +3.1
1,247,759 - Pf6N2E2_1069 0.30 +2.6
1,247,760 + Pf6N2E2_1069 0.30 -1.9
1,247,760 + Pf6N2E2_1069 0.30 -0.1
1,247,761 - Pf6N2E2_1069 0.30 +2.6
1,247,761 - Pf6N2E2_1069 0.30 +0.0
1,247,761 - Pf6N2E2_1069 0.30 -0.1
1,247,761 - Pf6N2E2_1069 0.30 +2.9
1,247,761 - Pf6N2E2_1069 0.30 -0.2
1,247,761 - Pf6N2E2_1069 0.30 +0.4
1,247,761 - Pf6N2E2_1069 0.30 +2.8
1,247,831 + Pf6N2E2_1069 0.33 +0.1
1,247,831 + Pf6N2E2_1069 0.33 +0.2
1,247,832 - Pf6N2E2_1069 0.33 +0.9
1,247,841 + Pf6N2E2_1069 0.33 +2.0
1,247,995 + Pf6N2E2_1069 0.40 +0.2
1,248,130 + Pf6N2E2_1069 0.46 +1.2
1,248,321 - Pf6N2E2_1069 0.54 -1.4
1,248,321 - Pf6N2E2_1069 0.54 -1.6
1,248,421 + Pf6N2E2_1069 0.58 +1.9
1,248,421 + Pf6N2E2_1069 0.58 -1.9
1,248,421 + Pf6N2E2_1069 0.58 -0.9
1,248,421 + Pf6N2E2_1069 0.58 -1.9
1,248,421 + Pf6N2E2_1069 0.58 -1.1
1,248,421 + Pf6N2E2_1069 0.58 +0.4
1,248,421 + Pf6N2E2_1069 0.58 +2.0
1,248,422 - Pf6N2E2_1069 0.58 -1.9
1,248,422 - Pf6N2E2_1069 0.58 -2.3
1,248,422 - Pf6N2E2_1069 0.58 +0.4
1,248,477 + Pf6N2E2_1069 0.60 -1.4
1,248,477 + Pf6N2E2_1069 0.60 +1.0
1,248,477 + Pf6N2E2_1069 0.60 -0.7
1,248,477 + Pf6N2E2_1069 0.60 -0.3
1,248,621 - Pf6N2E2_1069 0.66 -1.9
1,249,136 + Pf6N2E2_1069 0.88 -2.0
1,249,378 + +0.1
1,249,378 + +0.4
1,249,378 + -0.3
1,249,378 + +0.1
1,249,378 + -1.6
1,249,379 - -2.9
1,249,379 - -3.3
1,249,379 - +1.0
1,249,490 + -1.4
1,249,533 + +2.4
1,249,596 + -2.3
1,249,611 + +1.5
1,249,611 + -0.4
1,249,611 + +1.2
1,249,611 + +0.1
1,249,612 - +4.5
1,249,612 - -1.7
1,249,647 + +2.6
1,249,648 - -0.6
1,249,648 - +0.6
1,249,686 + +0.6
1,249,707 + -0.7
1,249,707 + +0.2
1,249,707 + +1.8
1,249,707 + +2.5
1,249,887 + -1.4
1,249,887 + -2.7
1,249,887 + -2.5
1,249,894 + +1.1
1,249,993 + Pf6N2E2_1070 0.12 -0.4
1,249,994 - Pf6N2E2_1070 0.13 +0.3
1,249,994 - Pf6N2E2_1070 0.13 -0.1
1,249,994 - Pf6N2E2_1070 0.13 -0.8
1,249,997 + Pf6N2E2_1070 0.13 -0.7
1,249,997 + Pf6N2E2_1070 0.13 -1.5
1,249,997 + Pf6N2E2_1070 0.13 -0.0
1,249,997 + Pf6N2E2_1070 0.13 -2.5
1,249,997 + Pf6N2E2_1070 0.13 -0.4
1,249,998 - Pf6N2E2_1070 0.13 +0.1
1,249,998 - Pf6N2E2_1070 0.13 +1.1
1,249,998 - Pf6N2E2_1070 0.13 +1.1
1,249,998 - Pf6N2E2_1070 0.13 -0.6
1,250,032 + Pf6N2E2_1070 0.17 +0.8
1,250,033 - Pf6N2E2_1070 0.17 +2.5
1,250,080 + Pf6N2E2_1070 0.23 -2.4
1,250,081 - Pf6N2E2_1070 0.23 -2.1

Or see this region's nucleotide sequence