Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27680

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS27675 and BWI76_RS27680 are separated by 80 nucleotidesBWI76_RS27680 and BWI76_RS27685 are separated by 148 nucleotides BWI76_RS27675: BWI76_RS27675 - EmrB/QacA family drug resistance transporter, at 5,740,986 to 5,742,482 _RS27675 BWI76_RS27680: BWI76_RS27680 - TetR family transcriptional regulator, at 5,742,563 to 5,743,210 _RS27680 BWI76_RS27685: BWI76_RS27685 - N-acetyltransferase, at 5,743,359 to 5,743,775 _RS27685 Position (kb) 5742 5743 5744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5741.584 kb on + strand, within BWI76_RS27675at 5741.594 kb on + strand, within BWI76_RS27675at 5741.841 kb on + strand, within BWI76_RS27675at 5742.099 kb on - strand, within BWI76_RS27675at 5742.169 kb on - strand, within BWI76_RS27675at 5742.284 kb on - strand, within BWI76_RS27675at 5742.336 kb on - strandat 5742.477 kb on + strandat 5742.654 kb on + strand, within BWI76_RS27680at 5742.668 kb on - strand, within BWI76_RS27680at 5743.065 kb on + strand, within BWI76_RS27680at 5743.073 kb on - strand, within BWI76_RS27680at 5743.073 kb on - strand, within BWI76_RS27680at 5743.073 kb on - strand, within BWI76_RS27680at 5743.080 kb on + strand, within BWI76_RS27680at 5743.170 kb on + strandat 5743.178 kb on - strandat 5743.229 kb on + strandat 5743.240 kb on + strandat 5743.247 kb on + strandat 5743.354 kb on - strandat 5743.354 kb on - strandat 5743.396 kb on - strandat 5743.492 kb on - strand, within BWI76_RS27685at 5743.492 kb on - strand, within BWI76_RS27685at 5743.597 kb on + strand, within BWI76_RS27685at 5743.635 kb on + strand, within BWI76_RS27685at 5743.669 kb on - strand, within BWI76_RS27685at 5743.674 kb on + strand, within BWI76_RS27685at 5743.674 kb on + strand, within BWI76_RS27685at 5743.674 kb on + strand, within BWI76_RS27685at 5743.674 kb on + strand, within BWI76_RS27685at 5743.682 kb on - strand, within BWI76_RS27685at 5743.684 kb on + strand, within BWI76_RS27685at 5743.684 kb on + strand, within BWI76_RS27685at 5743.685 kb on + strand, within BWI76_RS27685at 5743.685 kb on + strand, within BWI76_RS27685at 5743.685 kb on + strand, within BWI76_RS27685at 5743.685 kb on + strand, within BWI76_RS27685at 5743.685 kb on + strand, within BWI76_RS27685at 5743.693 kb on - strand, within BWI76_RS27685at 5743.693 kb on - strand, within BWI76_RS27685at 5743.695 kb on + strand, within BWI76_RS27685at 5743.713 kb on - strand, within BWI76_RS27685at 5743.717 kb on + strand, within BWI76_RS27685at 5743.717 kb on + strand, within BWI76_RS27685at 5743.717 kb on + strand, within BWI76_RS27685at 5743.717 kb on + strand, within BWI76_RS27685at 5743.723 kb on - strand, within BWI76_RS27685at 5743.725 kb on - strand, within BWI76_RS27685at 5743.725 kb on - strand, within BWI76_RS27685at 5743.725 kb on - strand, within BWI76_RS27685at 5743.725 kb on - strand, within BWI76_RS27685at 5743.730 kb on + strand, within BWI76_RS27685at 5743.735 kb on - strandat 5743.759 kb on + strandat 5743.814 kb on - strandat 5743.814 kb on - strandat 5743.908 kb on + strandat 5743.916 kb on - strandat 5743.916 kb on - strandat 5743.916 kb on - strandat 5744.052 kb on + strandat 5744.097 kb on + strandat 5744.105 kb on - strandat 5744.120 kb on - strandat 5744.134 kb on + strandat 5744.153 kb on + strandat 5744.153 kb on + strandat 5744.153 kb on + strandat 5744.154 kb on + strandat 5744.161 kb on - strandat 5744.161 kb on - strandat 5744.171 kb on + strandat 5744.171 kb on + strandat 5744.171 kb on + strandat 5744.171 kb on + strandat 5744.171 kb on + strandat 5744.171 kb on + strandat 5744.171 kb on + strandat 5744.173 kb on + strandat 5744.179 kb on - strandat 5744.179 kb on - strandat 5744.179 kb on - strandat 5744.179 kb on - strandat 5744.179 kb on - strandat 5744.179 kb on - strandat 5744.179 kb on - strandat 5744.185 kb on - strandat 5744.203 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
5,741,584 + BWI76_RS27675 0.40 +0.4
5,741,594 + BWI76_RS27675 0.41 -0.8
5,741,841 + BWI76_RS27675 0.57 -2.9
5,742,099 - BWI76_RS27675 0.74 +1.9
5,742,169 - BWI76_RS27675 0.79 -3.5
5,742,284 - BWI76_RS27675 0.87 +1.0
5,742,336 - -0.3
5,742,477 + -0.3
5,742,654 + BWI76_RS27680 0.14 +0.3
5,742,668 - BWI76_RS27680 0.16 -2.8
5,743,065 + BWI76_RS27680 0.77 +0.4
5,743,073 - BWI76_RS27680 0.79 +0.7
5,743,073 - BWI76_RS27680 0.79 -3.7
5,743,073 - BWI76_RS27680 0.79 +0.1
5,743,080 + BWI76_RS27680 0.80 +2.0
5,743,170 + +0.7
5,743,178 - +0.2
5,743,229 + -0.1
5,743,240 + +0.4
5,743,247 + +0.6
5,743,354 - -1.0
5,743,354 - -0.2
5,743,396 - -0.1
5,743,492 - BWI76_RS27685 0.32 -2.0
5,743,492 - BWI76_RS27685 0.32 -2.5
5,743,597 + BWI76_RS27685 0.57 -0.6
5,743,635 + BWI76_RS27685 0.66 -0.0
5,743,669 - BWI76_RS27685 0.74 +0.1
5,743,674 + BWI76_RS27685 0.76 +0.2
5,743,674 + BWI76_RS27685 0.76 +0.1
5,743,674 + BWI76_RS27685 0.76 -0.8
5,743,674 + BWI76_RS27685 0.76 +0.8
5,743,682 - BWI76_RS27685 0.77 -1.6
5,743,684 + BWI76_RS27685 0.78 +1.2
5,743,684 + BWI76_RS27685 0.78 -0.2
5,743,685 + BWI76_RS27685 0.78 -0.3
5,743,685 + BWI76_RS27685 0.78 +1.7
5,743,685 + BWI76_RS27685 0.78 +0.2
5,743,685 + BWI76_RS27685 0.78 -0.5
5,743,685 + BWI76_RS27685 0.78 +0.8
5,743,693 - BWI76_RS27685 0.80 +1.3
5,743,693 - BWI76_RS27685 0.80 +0.4
5,743,695 + BWI76_RS27685 0.81 +1.1
5,743,713 - BWI76_RS27685 0.85 -1.4
5,743,717 + BWI76_RS27685 0.86 -1.8
5,743,717 + BWI76_RS27685 0.86 -0.8
5,743,717 + BWI76_RS27685 0.86 -1.0
5,743,717 + BWI76_RS27685 0.86 -2.0
5,743,723 - BWI76_RS27685 0.87 +1.0
5,743,725 - BWI76_RS27685 0.88 -1.3
5,743,725 - BWI76_RS27685 0.88 +0.8
5,743,725 - BWI76_RS27685 0.88 +1.1
5,743,725 - BWI76_RS27685 0.88 +0.9
5,743,730 + BWI76_RS27685 0.89 -0.4
5,743,735 - -0.5
5,743,759 + -0.1
5,743,814 - -0.3
5,743,814 - +0.4
5,743,908 + -0.0
5,743,916 - -0.6
5,743,916 - -0.5
5,743,916 - +0.4
5,744,052 + -0.9
5,744,097 + -1.2
5,744,105 - -2.4
5,744,120 - -1.5
5,744,134 + +0.4
5,744,153 + -0.5
5,744,153 + +1.0
5,744,153 + -2.6
5,744,154 + -3.1
5,744,161 - +0.4
5,744,161 - -0.2
5,744,171 + -0.2
5,744,171 + -1.9
5,744,171 + -1.5
5,744,171 + -2.0
5,744,171 + -1.7
5,744,171 + -0.2
5,744,171 + +0.4
5,744,173 + +0.4
5,744,179 - +0.7
5,744,179 - -0.6
5,744,179 - -0.6
5,744,179 - -2.4
5,744,179 - +0.5
5,744,179 - +0.9
5,744,179 - +0.2
5,744,185 - -2.8
5,744,203 + +0.1

Or see this region's nucleotide sequence