Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24050

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24030 and BWI76_RS24035 are separated by 8 nucleotidesBWI76_RS24035 and BWI76_RS24040 are separated by 118 nucleotidesBWI76_RS24040 and BWI76_RS24045 are separated by 15 nucleotidesBWI76_RS24045 and BWI76_RS24050 are separated by 62 nucleotidesBWI76_RS24050 and BWI76_RS24055 are separated by 379 nucleotides BWI76_RS24030: BWI76_RS24030 - arginine decarboxylase, at 5,015,360 to 5,017,336 _RS24030 BWI76_RS24035: BWI76_RS24035 - hypothetical protein, at 5,017,345 to 5,017,491 _RS24035 BWI76_RS24040: BWI76_RS24040 - hypothetical protein, at 5,017,610 to 5,017,855 _RS24040 BWI76_RS24045: BWI76_RS24045 - hypothetical protein, at 5,017,871 to 5,018,116 _RS24045 BWI76_RS24050: BWI76_RS24050 - methionine adenosyltransferase, at 5,018,179 to 5,019,333 _RS24050 BWI76_RS24055: BWI76_RS24055 - MFS transporter, at 5,019,713 to 5,021,107 _RS24055 Position (kb) 5018 5019 5020Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5017.314 kb on + strandat 5017.322 kb on - strandat 5017.408 kb on + strand, within BWI76_RS24035at 5017.408 kb on + strand, within BWI76_RS24035at 5017.416 kb on - strand, within BWI76_RS24035at 5017.433 kb on + strand, within BWI76_RS24035at 5017.446 kb on - strand, within BWI76_RS24035at 5017.497 kb on - strandat 5017.503 kb on + strandat 5017.503 kb on + strandat 5017.511 kb on - strandat 5017.511 kb on - strandat 5017.511 kb on - strandat 5017.511 kb on - strandat 5017.563 kb on - strandat 5017.592 kb on + strandat 5017.602 kb on - strandat 5017.620 kb on - strandat 5017.620 kb on - strandat 5017.629 kb on + strandat 5017.651 kb on - strand, within BWI76_RS24040at 5017.724 kb on + strand, within BWI76_RS24040at 5017.756 kb on + strand, within BWI76_RS24040at 5017.829 kb on - strand, within BWI76_RS24040at 5017.868 kb on + strandat 5019.413 kb on + strandat 5019.421 kb on - strandat 5019.484 kb on + strandat 5019.717 kb on - strandat 5019.835 kb on - strandat 5019.835 kb on - strandat 5019.888 kb on + strand, within BWI76_RS24055at 5019.922 kb on + strand, within BWI76_RS24055

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
5,017,314 + +2.3
5,017,322 - +1.0
5,017,408 + BWI76_RS24035 0.43 +1.0
5,017,408 + BWI76_RS24035 0.43 -1.4
5,017,416 - BWI76_RS24035 0.48 -2.7
5,017,433 + BWI76_RS24035 0.60 +1.7
5,017,446 - BWI76_RS24035 0.69 -2.9
5,017,497 - +0.4
5,017,503 + +0.5
5,017,503 + +2.4
5,017,511 - -0.1
5,017,511 - -0.5
5,017,511 - -2.9
5,017,511 - -2.8
5,017,563 - -0.6
5,017,592 + -0.4
5,017,602 - -0.7
5,017,620 - -0.1
5,017,620 - +0.4
5,017,629 + +0.6
5,017,651 - BWI76_RS24040 0.17 -1.4
5,017,724 + BWI76_RS24040 0.46 -1.1
5,017,756 + BWI76_RS24040 0.59 -2.9
5,017,829 - BWI76_RS24040 0.89 +0.1
5,017,868 + -1.2
5,019,413 + -1.6
5,019,421 - +0.9
5,019,484 + +3.7
5,019,717 - +1.2
5,019,835 - -3.2
5,019,835 - +1.6
5,019,888 + BWI76_RS24055 0.13 -1.0
5,019,922 + BWI76_RS24055 0.15 -3.8

Or see this region's nucleotide sequence