Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19115

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19110 and BWI76_RS19115 are separated by 244 nucleotidesBWI76_RS19115 and BWI76_RS19120 are separated by 27 nucleotidesBWI76_RS19120 and BWI76_RS19125 are separated by 90 nucleotides BWI76_RS19110: BWI76_RS19110 - hypothetical protein, at 3,971,838 to 3,973,424 _RS19110 BWI76_RS19115: BWI76_RS19115 - outer membrane assembly protein AsmA, at 3,973,669 to 3,975,516 _RS19115 BWI76_RS19120: BWI76_RS19120 - dCTP deaminase, at 3,975,544 to 3,976,125 _RS19120 BWI76_RS19125: BWI76_RS19125 - uridine kinase, at 3,976,216 to 3,976,857 _RS19125 Position (kb) 3973 3974 3975 3976Strain fitness (log2 ratio) -2 -1 0 1 2at 3972.708 kb on + strand, within BWI76_RS19110at 3973.311 kb on - strandat 3973.518 kb on - strandat 3973.571 kb on - strandat 3973.571 kb on - strandat 3973.799 kb on - strandat 3973.992 kb on + strand, within BWI76_RS19115at 3973.997 kb on + strand, within BWI76_RS19115at 3974.041 kb on + strand, within BWI76_RS19115at 3974.049 kb on - strand, within BWI76_RS19115at 3974.084 kb on - strand, within BWI76_RS19115at 3974.572 kb on - strand, within BWI76_RS19115at 3974.696 kb on + strand, within BWI76_RS19115at 3974.715 kb on + strand, within BWI76_RS19115at 3974.717 kb on + strand, within BWI76_RS19115at 3974.988 kb on - strand, within BWI76_RS19115at 3975.669 kb on + strand, within BWI76_RS19120

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,972,708 + BWI76_RS19110 0.55 +0.0
3,973,311 - +0.7
3,973,518 - +0.2
3,973,571 - +0.3
3,973,571 - -0.1
3,973,799 - +0.7
3,973,992 + BWI76_RS19115 0.17 +0.1
3,973,997 + BWI76_RS19115 0.18 -2.2
3,974,041 + BWI76_RS19115 0.20 -0.3
3,974,049 - BWI76_RS19115 0.21 +0.2
3,974,084 - BWI76_RS19115 0.22 +1.1
3,974,572 - BWI76_RS19115 0.49 +0.1
3,974,696 + BWI76_RS19115 0.56 +2.0
3,974,715 + BWI76_RS19115 0.57 -1.4
3,974,717 + BWI76_RS19115 0.57 +0.4
3,974,988 - BWI76_RS19115 0.71 +0.1
3,975,669 + BWI76_RS19120 0.21 +1.2

Or see this region's nucleotide sequence