Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18930 and BWI76_RS18935 overlap by 4 nucleotides BWI76_RS18935 and BWI76_RS18940 overlap by 1 nucleotides BWI76_RS18940 and BWI76_RS18945 overlap by 1 nucleotides
BWI76_RS18930: BWI76_RS18930 - histidinol-phosphate transaminase, at 3,926,839 to 3,927,900
_RS18930
BWI76_RS18935: BWI76_RS18935 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 3,927,897 to 3,928,964
_RS18935
BWI76_RS18940: BWI76_RS18940 - imidazole glycerol phosphate synthase subunit HisH, at 3,928,964 to 3,929,554
_RS18940
BWI76_RS18945: BWI76_RS18945 - 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase, at 3,929,554 to 3,930,291
_RS18945
Position (kb)
3927
3928
3929 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3926.960 kb on + strand, within BWI76_RS18930 at 3927.342 kb on + strand, within BWI76_RS18930 at 3927.645 kb on - strand, within BWI76_RS18930 at 3927.841 kb on + strand at 3928.350 kb on + strand, within BWI76_RS18935 at 3928.358 kb on - strand, within BWI76_RS18935 at 3928.547 kb on + strand, within BWI76_RS18935 at 3928.788 kb on + strand, within BWI76_RS18935 at 3928.813 kb on + strand, within BWI76_RS18935 at 3928.820 kb on - strand, within BWI76_RS18935 at 3928.839 kb on - strand, within BWI76_RS18935 at 3929.066 kb on + strand, within BWI76_RS18940 at 3929.157 kb on - strand, within BWI76_RS18940 at 3929.368 kb on - strand, within BWI76_RS18940 at 3929.441 kb on + strand, within BWI76_RS18940 at 3929.476 kb on + strand, within BWI76_RS18940
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,926,960 + BWI76_RS18930 0.11 -4.3 3,927,342 + BWI76_RS18930 0.47 -5.0 3,927,645 - BWI76_RS18930 0.76 -6.2 3,927,841 + -5.6 3,928,350 + BWI76_RS18935 0.42 -4.8 3,928,358 - BWI76_RS18935 0.43 -4.6 3,928,547 + BWI76_RS18935 0.61 -1.1 3,928,788 + BWI76_RS18935 0.83 -6.1 3,928,813 + BWI76_RS18935 0.86 -5.3 3,928,820 - BWI76_RS18935 0.86 -2.8 3,928,839 - BWI76_RS18935 0.88 -5.1 3,929,066 + BWI76_RS18940 0.17 -2.8 3,929,157 - BWI76_RS18940 0.33 -2.8 3,929,368 - BWI76_RS18940 0.68 -6.3 3,929,441 + BWI76_RS18940 0.81 -4.0 3,929,476 + BWI76_RS18940 0.87 -3.2
Or see this region's nucleotide sequence