Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18045

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18040 and BWI76_RS18045 are separated by 14 nucleotidesBWI76_RS18045 and BWI76_RS18050 are separated by 384 nucleotidesBWI76_RS18050 and BWI76_RS18055 are separated by 16 nucleotides BWI76_RS18040: BWI76_RS18040 - fimbrial assembly protein, at 3,748,032 to 3,750,362 _RS18040 BWI76_RS18045: BWI76_RS18045 - spore coat U domain-containing protein, at 3,750,377 to 3,751,336 _RS18045 BWI76_RS18050: BWI76_RS18050 - hypothetical protein, at 3,751,721 to 3,752,059 _RS18050 BWI76_RS18055: BWI76_RS18055 - copper resistance protein D, at 3,752,076 to 3,752,945 _RS18055 Position (kb) 3750 3751 3752Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3749.593 kb on + strand, within BWI76_RS18040at 3749.601 kb on - strand, within BWI76_RS18040at 3749.694 kb on - strand, within BWI76_RS18040at 3750.140 kb on - strandat 3750.269 kb on - strandat 3750.397 kb on - strandat 3750.406 kb on + strandat 3750.457 kb on + strandat 3750.494 kb on + strand, within BWI76_RS18045at 3750.509 kb on + strand, within BWI76_RS18045at 3750.655 kb on + strand, within BWI76_RS18045at 3750.690 kb on - strand, within BWI76_RS18045at 3750.719 kb on - strand, within BWI76_RS18045at 3750.726 kb on + strand, within BWI76_RS18045at 3750.734 kb on - strand, within BWI76_RS18045at 3750.920 kb on + strand, within BWI76_RS18045at 3750.928 kb on - strand, within BWI76_RS18045at 3751.332 kb on + strandat 3751.492 kb on + strandat 3751.512 kb on + strandat 3751.548 kb on + strandat 3751.796 kb on - strand, within BWI76_RS18050at 3751.922 kb on + strand, within BWI76_RS18050at 3751.977 kb on - strand, within BWI76_RS18050at 3751.977 kb on - strand, within BWI76_RS18050at 3752.115 kb on - strandat 3752.163 kb on + strand, within BWI76_RS18055

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,749,593 + BWI76_RS18040 0.67 -0.8
3,749,601 - BWI76_RS18040 0.67 +0.2
3,749,694 - BWI76_RS18040 0.71 -0.1
3,750,140 - -0.3
3,750,269 - -0.2
3,750,397 - +0.8
3,750,406 + -1.5
3,750,457 + -2.8
3,750,494 + BWI76_RS18045 0.12 -1.3
3,750,509 + BWI76_RS18045 0.14 +0.1
3,750,655 + BWI76_RS18045 0.29 -0.6
3,750,690 - BWI76_RS18045 0.33 +0.2
3,750,719 - BWI76_RS18045 0.36 -1.2
3,750,726 + BWI76_RS18045 0.36 -4.2
3,750,734 - BWI76_RS18045 0.37 +0.7
3,750,920 + BWI76_RS18045 0.57 +0.4
3,750,928 - BWI76_RS18045 0.57 +0.6
3,751,332 + -1.8
3,751,492 + +1.1
3,751,512 + +1.0
3,751,548 + +0.2
3,751,796 - BWI76_RS18050 0.22 -0.5
3,751,922 + BWI76_RS18050 0.59 -1.3
3,751,977 - BWI76_RS18050 0.76 -2.3
3,751,977 - BWI76_RS18050 0.76 -0.6
3,752,115 - +1.7
3,752,163 + BWI76_RS18055 0.10 -0.2

Or see this region's nucleotide sequence