Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16035 and BWI76_RS16040 overlap by 1 nucleotides BWI76_RS16040 and BWI76_RS16045 are separated by 129 nucleotides BWI76_RS16045 and BWI76_RS16050 are separated by 2 nucleotides BWI76_RS16050 and BWI76_RS16055 overlap by 4 nucleotides
BWI76_RS16035: BWI76_RS16035 - biotin-independent malonate decarboxylase subunit beta, at 3,324,924 to 3,325,757
_RS16035
BWI76_RS16040: BWI76_RS16040 - biotin-independent malonate decarboxylase subunit gamma, at 3,325,757 to 3,326,557
_RS16040
BWI76_RS16045: BWI76_RS16045 - transporter, at 3,326,687 to 3,327,646
_RS16045
BWI76_RS16050: BWI76_RS16050 - malonate decarboxylase holo-ACP synthase, at 3,327,649 to 3,328,269
_RS16050
BWI76_RS16055: BWI76_RS16055 - malonate decarboxylase subunit epsilon, at 3,328,266 to 3,329,168
_RS16055
Position (kb)
3326
3327
3328 Strain fitness (log2 ratio)
-2
-1
0
1 at 3326.371 kb on + strand, within BWI76_RS16040 at 3326.379 kb on - strand, within BWI76_RS16040 at 3326.517 kb on + strand at 3326.525 kb on - strand at 3326.580 kb on - strand at 3326.582 kb on + strand at 3326.841 kb on - strand, within BWI76_RS16045 at 3327.330 kb on + strand, within BWI76_RS16045 at 3327.471 kb on + strand, within BWI76_RS16045 at 3327.735 kb on + strand, within BWI76_RS16050 at 3327.812 kb on - strand, within BWI76_RS16050 at 3327.883 kb on - strand, within BWI76_RS16050 at 3328.433 kb on - strand, within BWI76_RS16055 at 3328.607 kb on + strand, within BWI76_RS16055
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,326,371 + BWI76_RS16040 0.77 +1.2 3,326,379 - BWI76_RS16040 0.78 +1.4 3,326,517 + +1.0 3,326,525 - -0.2 3,326,580 - -1.3 3,326,582 + -0.1 3,326,841 - BWI76_RS16045 0.16 +1.7 3,327,330 + BWI76_RS16045 0.67 -1.2 3,327,471 + BWI76_RS16045 0.82 -2.4 3,327,735 + BWI76_RS16050 0.14 +0.2 3,327,812 - BWI76_RS16050 0.26 -1.1 3,327,883 - BWI76_RS16050 0.38 -0.2 3,328,433 - BWI76_RS16055 0.18 +0.8 3,328,607 + BWI76_RS16055 0.38 +0.8
Or see this region's nucleotide sequence