Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16045

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16035 and BWI76_RS16040 overlap by 1 nucleotidesBWI76_RS16040 and BWI76_RS16045 are separated by 129 nucleotidesBWI76_RS16045 and BWI76_RS16050 are separated by 2 nucleotidesBWI76_RS16050 and BWI76_RS16055 overlap by 4 nucleotides BWI76_RS16035: BWI76_RS16035 - biotin-independent malonate decarboxylase subunit beta, at 3,324,924 to 3,325,757 _RS16035 BWI76_RS16040: BWI76_RS16040 - biotin-independent malonate decarboxylase subunit gamma, at 3,325,757 to 3,326,557 _RS16040 BWI76_RS16045: BWI76_RS16045 - transporter, at 3,326,687 to 3,327,646 _RS16045 BWI76_RS16050: BWI76_RS16050 - malonate decarboxylase holo-ACP synthase, at 3,327,649 to 3,328,269 _RS16050 BWI76_RS16055: BWI76_RS16055 - malonate decarboxylase subunit epsilon, at 3,328,266 to 3,329,168 _RS16055 Position (kb) 3326 3327 3328Strain fitness (log2 ratio) -2 -1 0 1at 3326.371 kb on + strand, within BWI76_RS16040at 3326.379 kb on - strand, within BWI76_RS16040at 3326.517 kb on + strandat 3326.525 kb on - strandat 3326.580 kb on - strandat 3326.582 kb on + strandat 3326.841 kb on - strand, within BWI76_RS16045at 3327.330 kb on + strand, within BWI76_RS16045at 3327.471 kb on + strand, within BWI76_RS16045at 3327.735 kb on + strand, within BWI76_RS16050at 3327.812 kb on - strand, within BWI76_RS16050at 3327.883 kb on - strand, within BWI76_RS16050at 3328.433 kb on - strand, within BWI76_RS16055at 3328.607 kb on + strand, within BWI76_RS16055

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,326,371 + BWI76_RS16040 0.77 +1.2
3,326,379 - BWI76_RS16040 0.78 +1.4
3,326,517 + +1.0
3,326,525 - -0.2
3,326,580 - -1.3
3,326,582 + -0.1
3,326,841 - BWI76_RS16045 0.16 +1.7
3,327,330 + BWI76_RS16045 0.67 -1.2
3,327,471 + BWI76_RS16045 0.82 -2.4
3,327,735 + BWI76_RS16050 0.14 +0.2
3,327,812 - BWI76_RS16050 0.26 -1.1
3,327,883 - BWI76_RS16050 0.38 -0.2
3,328,433 - BWI76_RS16055 0.18 +0.8
3,328,607 + BWI76_RS16055 0.38 +0.8

Or see this region's nucleotide sequence