Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10770 and BWI76_RS10775 overlap by 8 nucleotides BWI76_RS10775 and BWI76_RS10780 overlap by 1 nucleotides BWI76_RS10780 and BWI76_RS10785 are separated by 286 nucleotides BWI76_RS10785 and BWI76_RS10790 overlap by 4 nucleotides
BWI76_RS10770: BWI76_RS10770 - pyrimidine utilization protein C, at 2,273,743 to 2,274,135
_RS10770
BWI76_RS10775: BWI76_RS10775 - pyrimidine utilization protein B, at 2,274,128 to 2,274,838
_RS10775
BWI76_RS10780: BWI76_RS10780 - pyrimidine utilization protein A, at 2,274,838 to 2,275,929
_RS10780
BWI76_RS10785: BWI76_RS10785 - transcriptional regulator, at 2,276,216 to 2,276,854
_RS10785
BWI76_RS10790: BWI76_RS10790 - hypothetical protein, at 2,276,851 to 2,277,246
_RS10790
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2273.851 kb on - strand, within BWI76_RS10770 at 2273.922 kb on + strand, within BWI76_RS10770 at 2274.148 kb on + strand at 2274.172 kb on + strand at 2274.274 kb on - strand, within BWI76_RS10775 at 2274.279 kb on + strand, within BWI76_RS10775 at 2274.392 kb on + strand, within BWI76_RS10775 at 2274.414 kb on + strand, within BWI76_RS10775 at 2274.529 kb on + strand, within BWI76_RS10775 at 2274.537 kb on - strand, within BWI76_RS10775 at 2274.735 kb on - strand, within BWI76_RS10775 at 2274.788 kb on + strand at 2274.796 kb on + strand at 2275.360 kb on + strand, within BWI76_RS10780 at 2275.368 kb on - strand, within BWI76_RS10780 at 2275.654 kb on - strand, within BWI76_RS10780 at 2275.784 kb on + strand, within BWI76_RS10780 at 2275.861 kb on + strand at 2275.864 kb on - strand at 2275.869 kb on - strand at 2275.984 kb on - strand at 2276.219 kb on + strand at 2276.219 kb on + strand at 2276.227 kb on - strand at 2276.227 kb on - strand at 2276.385 kb on + strand, within BWI76_RS10785 at 2276.393 kb on - strand, within BWI76_RS10785 at 2276.402 kb on - strand, within BWI76_RS10785 at 2276.482 kb on - strand, within BWI76_RS10785 at 2276.525 kb on - strand, within BWI76_RS10785 at 2276.525 kb on - strand, within BWI76_RS10785 at 2276.728 kb on + strand, within BWI76_RS10785 at 2276.728 kb on + strand, within BWI76_RS10785
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 2,273,851 - BWI76_RS10770 0.27 -5.7 2,273,922 + BWI76_RS10770 0.46 -2.2 2,274,148 + -3.5 2,274,172 + +1.4 2,274,274 - BWI76_RS10775 0.21 -4.1 2,274,279 + BWI76_RS10775 0.21 -5.2 2,274,392 + BWI76_RS10775 0.37 -5.7 2,274,414 + BWI76_RS10775 0.40 -3.6 2,274,529 + BWI76_RS10775 0.56 -4.8 2,274,537 - BWI76_RS10775 0.58 -4.8 2,274,735 - BWI76_RS10775 0.85 -4.7 2,274,788 + -3.9 2,274,796 + -3.5 2,275,360 + BWI76_RS10780 0.48 -5.1 2,275,368 - BWI76_RS10780 0.49 -2.6 2,275,654 - BWI76_RS10780 0.75 -3.8 2,275,784 + BWI76_RS10780 0.87 -3.8 2,275,861 + -5.6 2,275,864 - -5.7 2,275,869 - -4.2 2,275,984 - -3.7 2,276,219 + -0.1 2,276,219 + -1.2 2,276,227 - +0.6 2,276,227 - -0.5 2,276,385 + BWI76_RS10785 0.26 -3.4 2,276,393 - BWI76_RS10785 0.28 -0.1 2,276,402 - BWI76_RS10785 0.29 -0.9 2,276,482 - BWI76_RS10785 0.42 +0.3 2,276,525 - BWI76_RS10785 0.48 -2.2 2,276,525 - BWI76_RS10785 0.48 -0.4 2,276,728 + BWI76_RS10785 0.80 -0.5 2,276,728 + BWI76_RS10785 0.80 +0.7
Or see this region's nucleotide sequence