Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09565

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09555 and BWI76_RS09560 are separated by 151 nucleotidesBWI76_RS09560 and BWI76_RS09565 are separated by 39 nucleotidesBWI76_RS09565 and BWI76_RS09570 are separated by 11 nucleotides BWI76_RS09555: BWI76_RS09555 - pyruvate oxidase, at 1,998,424 to 2,000,142 _RS09555 BWI76_RS09560: BWI76_RS09560 - DoxX family membrane protein, at 2,000,294 to 2,000,728 _RS09560 BWI76_RS09565: BWI76_RS09565 - hybrid-cluster NAD(P)-dependent oxidoreductase, at 2,000,768 to 2,001,736 _RS09565 BWI76_RS09570: BWI76_RS09570 - hydroxylamine reductase, at 2,001,748 to 2,003,400 _RS09570 Position (kb) 2000 2001 2002Strain fitness (log2 ratio) -3 -2 -1 0 1at 2000.108 kb on - strandat 2000.178 kb on + strandat 2000.441 kb on - strand, within BWI76_RS09560at 2000.602 kb on - strand, within BWI76_RS09560at 2000.916 kb on - strand, within BWI76_RS09565at 2000.965 kb on + strand, within BWI76_RS09565at 2001.280 kb on + strand, within BWI76_RS09565at 2001.288 kb on - strand, within BWI76_RS09565at 2001.446 kb on - strand, within BWI76_RS09565at 2001.562 kb on + strand, within BWI76_RS09565at 2001.966 kb on + strand, within BWI76_RS09570at 2002.022 kb on + strand, within BWI76_RS09570at 2002.096 kb on - strand, within BWI76_RS09570at 2002.134 kb on - strand, within BWI76_RS09570at 2002.249 kb on - strand, within BWI76_RS09570at 2002.592 kb on + strand, within BWI76_RS09570at 2002.643 kb on + strand, within BWI76_RS09570at 2002.668 kb on + strand, within BWI76_RS09570

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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2,000,108 - +0.8
2,000,178 + -0.5
2,000,441 - BWI76_RS09560 0.34 -3.3
2,000,602 - BWI76_RS09560 0.71 -0.4
2,000,916 - BWI76_RS09565 0.15 +0.7
2,000,965 + BWI76_RS09565 0.20 +0.4
2,001,280 + BWI76_RS09565 0.53 +0.6
2,001,288 - BWI76_RS09565 0.54 -1.3
2,001,446 - BWI76_RS09565 0.70 +1.3
2,001,562 + BWI76_RS09565 0.82 +1.7
2,001,966 + BWI76_RS09570 0.13 +0.1
2,002,022 + BWI76_RS09570 0.17 -0.5
2,002,096 - BWI76_RS09570 0.21 -0.5
2,002,134 - BWI76_RS09570 0.23 -1.2
2,002,249 - BWI76_RS09570 0.30 +0.3
2,002,592 + BWI76_RS09570 0.51 +1.2
2,002,643 + BWI76_RS09570 0.54 -1.0
2,002,668 + BWI76_RS09570 0.56 +0.6

Or see this region's nucleotide sequence