Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09515

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09505 and BWI76_RS09510 overlap by 1 nucleotidesBWI76_RS09510 and BWI76_RS09515 are separated by 6 nucleotidesBWI76_RS09515 and BWI76_RS09520 are separated by 19 nucleotidesBWI76_RS09520 and BWI76_RS09525 are separated by 227 nucleotides BWI76_RS09505: BWI76_RS09505 - arginine transporter permease subunit ArtM, at 1,989,836 to 1,990,504 _RS09505 BWI76_RS09510: BWI76_RS09510 - arginine transporter permease subunit ArtQ, at 1,990,504 to 1,991,220 _RS09510 BWI76_RS09515: BWI76_RS09515 - arginine ABC transporter substrate-binding protein, at 1,991,227 to 1,991,958 _RS09515 BWI76_RS09520: BWI76_RS09520 - arginine ABC transporter ATP-binding protein ArtP, at 1,991,978 to 1,992,706 _RS09520 BWI76_RS09525: BWI76_RS09525 - lipoprotein, at 1,992,934 to 1,993,449 _RS09525 Position (kb) 1991 1992Strain fitness (log2 ratio) -2 -1 0 1at 1990.229 kb on + strand, within BWI76_RS09505at 1990.365 kb on + strand, within BWI76_RS09505at 1990.365 kb on + strand, within BWI76_RS09505at 1991.614 kb on - strand, within BWI76_RS09515at 1991.655 kb on - strand, within BWI76_RS09515at 1991.797 kb on - strand, within BWI76_RS09515at 1992.117 kb on + strand, within BWI76_RS09520at 1992.383 kb on + strand, within BWI76_RS09520at 1992.421 kb on - strand, within BWI76_RS09520at 1992.655 kb on - strandat 1992.704 kb on + strandat 1992.704 kb on + strandat 1992.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,990,229 + BWI76_RS09505 0.59 +0.0
1,990,365 + BWI76_RS09505 0.79 -2.3
1,990,365 + BWI76_RS09505 0.79 +0.3
1,991,614 - BWI76_RS09515 0.53 +1.6
1,991,655 - BWI76_RS09515 0.58 +0.8
1,991,797 - BWI76_RS09515 0.78 +1.1
1,992,117 + BWI76_RS09520 0.19 -2.0
1,992,383 + BWI76_RS09520 0.56 +1.2
1,992,421 - BWI76_RS09520 0.61 +0.3
1,992,655 - -0.2
1,992,704 + -1.5
1,992,704 + +0.0
1,992,712 - +1.6

Or see this region's nucleotide sequence