Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09220 and BWI76_RS09225 overlap by 37 nucleotides BWI76_RS09225 and BWI76_RS09230 are separated by 67 nucleotides BWI76_RS09230 and BWI76_RS09235 overlap by 1 nucleotides BWI76_RS09235 and BWI76_RS09240 overlap by 4 nucleotides BWI76_RS09240 and BWI76_RS09245 overlap by 4 nucleotides
BWI76_RS09220: BWI76_RS09220 - hypothetical protein, at 1,944,068 to 1,944,268
_RS09220
BWI76_RS09225: BWI76_RS09225 - hypothetical protein, at 1,944,232 to 1,944,573
_RS09225
BWI76_RS09230: BWI76_RS09230 - hypothetical protein, at 1,944,641 to 1,944,877
_RS09230
BWI76_RS09235: BWI76_RS09235 - TraR/DksA family transcriptional regulator, at 1,944,877 to 1,945,104
_RS09235
BWI76_RS09240: BWI76_RS09240 - phosphoadenosine phosphosulfate reductase, at 1,945,101 to 1,946,111
_RS09240
BWI76_RS09245: BWI76_RS09245 - bacteriophage replication gene A protein, at 1,946,108 to 1,948,519
_RS09245
Position (kb) 1945
1946
1947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1944.131 kb on + strand, within BWI76_RS09220 at 1944.154 kb on + strand, within BWI76_RS09220 at 1944.155 kb on + strand, within BWI76_RS09220 at 1944.178 kb on - strand, within BWI76_RS09220 at 1944.198 kb on + strand, within BWI76_RS09220 at 1944.206 kb on - strand, within BWI76_RS09220 at 1944.221 kb on - strand, within BWI76_RS09220 at 1944.246 kb on - strand at 1944.259 kb on + strand at 1944.267 kb on - strand at 1944.267 kb on - strand at 1944.269 kb on + strand, within BWI76_RS09225 at 1944.269 kb on + strand, within BWI76_RS09225 at 1944.269 kb on + strand, within BWI76_RS09225 at 1944.274 kb on + strand at 1944.277 kb on - strand, within BWI76_RS09225 at 1944.277 kb on - strand, within BWI76_RS09225 at 1944.290 kb on + strand, within BWI76_RS09225 at 1944.302 kb on - strand, within BWI76_RS09225 at 1944.322 kb on - strand, within BWI76_RS09225 at 1944.469 kb on - strand, within BWI76_RS09225 at 1944.478 kb on - strand, within BWI76_RS09225 at 1944.485 kb on - strand, within BWI76_RS09225 at 1944.485 kb on - strand, within BWI76_RS09225 at 1944.490 kb on - strand, within BWI76_RS09225 at 1944.502 kb on - strand, within BWI76_RS09225 at 1944.504 kb on + strand, within BWI76_RS09225 at 1944.504 kb on + strand, within BWI76_RS09225 at 1944.512 kb on - strand, within BWI76_RS09225 at 1944.512 kb on - strand, within BWI76_RS09225 at 1944.540 kb on - strand at 1944.804 kb on + strand, within BWI76_RS09230 at 1944.812 kb on - strand, within BWI76_RS09230 at 1944.852 kb on - strand, within BWI76_RS09230 at 1944.893 kb on + strand at 1944.896 kb on + strand at 1945.182 kb on - strand at 1945.182 kb on - strand at 1945.218 kb on - strand, within BWI76_RS09240 at 1945.331 kb on + strand, within BWI76_RS09240 at 1945.361 kb on + strand at 1945.535 kb on + strand, within BWI76_RS09240 at 1945.606 kb on + strand, within BWI76_RS09240 at 1946.216 kb on + strand at 1946.235 kb on + strand at 1946.370 kb on + strand, within BWI76_RS09245 at 1946.378 kb on - strand, within BWI76_RS09245 at 1946.440 kb on + strand, within BWI76_RS09245 at 1946.467 kb on - strand, within BWI76_RS09245 at 1946.586 kb on + strand, within BWI76_RS09245 at 1946.594 kb on - strand, within BWI76_RS09245 at 1946.604 kb on - strand, within BWI76_RS09245 at 1946.657 kb on + strand, within BWI76_RS09245 at 1946.701 kb on + strand, within BWI76_RS09245 at 1946.985 kb on + strand, within BWI76_RS09245 at 1947.111 kb on + strand, within BWI76_RS09245
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,944,131 + BWI76_RS09220 0.31 -2.0 1,944,154 + BWI76_RS09220 0.43 -0.9 1,944,155 + BWI76_RS09220 0.43 +1.1 1,944,178 - BWI76_RS09220 0.55 -0.0 1,944,198 + BWI76_RS09220 0.65 +1.0 1,944,206 - BWI76_RS09220 0.69 -1.2 1,944,221 - BWI76_RS09220 0.76 +0.8 1,944,246 - -0.8 1,944,259 + -1.1 1,944,267 - -0.3 1,944,267 - -1.6 1,944,269 + BWI76_RS09225 0.11 -0.5 1,944,269 + BWI76_RS09225 0.11 -2.3 1,944,269 + BWI76_RS09225 0.11 -1.6 1,944,274 + +1.1 1,944,277 - BWI76_RS09225 0.13 +0.4 1,944,277 - BWI76_RS09225 0.13 +0.2 1,944,290 + BWI76_RS09225 0.17 -2.7 1,944,302 - BWI76_RS09225 0.20 -1.4 1,944,322 - BWI76_RS09225 0.26 -1.9 1,944,469 - BWI76_RS09225 0.69 -1.1 1,944,478 - BWI76_RS09225 0.72 -1.3 1,944,485 - BWI76_RS09225 0.74 -2.5 1,944,485 - BWI76_RS09225 0.74 -0.1 1,944,490 - BWI76_RS09225 0.75 -0.2 1,944,502 - BWI76_RS09225 0.79 +0.6 1,944,504 + BWI76_RS09225 0.80 +0.2 1,944,504 + BWI76_RS09225 0.80 -2.5 1,944,512 - BWI76_RS09225 0.82 -0.9 1,944,512 - BWI76_RS09225 0.82 +0.5 1,944,540 - +0.7 1,944,804 + BWI76_RS09230 0.69 -0.6 1,944,812 - BWI76_RS09230 0.72 +1.9 1,944,852 - BWI76_RS09230 0.89 +0.6 1,944,893 + +1.0 1,944,896 + +1.0 1,945,182 - -2.3 1,945,182 - -1.1 1,945,218 - BWI76_RS09240 0.12 +0.3 1,945,331 + BWI76_RS09240 0.23 -2.6 1,945,361 + -0.9 1,945,535 + BWI76_RS09240 0.43 -1.2 1,945,606 + BWI76_RS09240 0.50 -1.0 1,946,216 + +0.4 1,946,235 + -0.2 1,946,370 + BWI76_RS09245 0.11 +0.7 1,946,378 - BWI76_RS09245 0.11 +0.7 1,946,440 + BWI76_RS09245 0.14 -0.1 1,946,467 - BWI76_RS09245 0.15 +0.4 1,946,586 + BWI76_RS09245 0.20 -0.6 1,946,594 - BWI76_RS09245 0.20 +1.6 1,946,604 - BWI76_RS09245 0.21 +0.1 1,946,657 + BWI76_RS09245 0.23 -0.3 1,946,701 + BWI76_RS09245 0.25 -0.8 1,946,985 + BWI76_RS09245 0.36 -1.5 1,947,111 + BWI76_RS09245 0.42 -0.0
Or see this region's nucleotide sequence