Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06210

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06200 and BWI76_RS06205 are separated by 45 nucleotidesBWI76_RS06205 and BWI76_RS06210 are separated by 37 nucleotidesBWI76_RS06210 and BWI76_RS06215 are separated by 37 nucleotidesBWI76_RS06215 and BWI76_RS06220 are separated by 288 nucleotides BWI76_RS06200: BWI76_RS06200 - hypothetical protein, at 1,300,189 to 1,300,473 _RS06200 BWI76_RS06205: BWI76_RS06205 - recombination-associated protein RdgC, at 1,300,519 to 1,301,430 _RS06205 BWI76_RS06210: BWI76_RS06210 - fructokinase, at 1,301,468 to 1,302,426 _RS06210 BWI76_RS06215: BWI76_RS06215 - NUDIX hydrolase, at 1,302,464 to 1,302,826 _RS06215 BWI76_RS06220: BWI76_RS06220 - exonuclease subunit SbcC, at 1,303,115 to 1,306,249 _RS06220 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -1 0 1at 1300.664 kb on - strand, within BWI76_RS06205at 1300.989 kb on - strand, within BWI76_RS06205at 1301.100 kb on - strand, within BWI76_RS06205at 1301.333 kb on + strand, within BWI76_RS06205at 1301.688 kb on + strand, within BWI76_RS06210at 1301.740 kb on - strand, within BWI76_RS06210at 1302.125 kb on + strand, within BWI76_RS06210at 1302.146 kb on + strand, within BWI76_RS06210at 1302.154 kb on - strand, within BWI76_RS06210at 1302.308 kb on - strand, within BWI76_RS06210at 1302.308 kb on - strand, within BWI76_RS06210at 1302.454 kb on + strandat 1302.490 kb on - strandat 1302.530 kb on + strand, within BWI76_RS06215at 1303.027 kb on - strandat 1303.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,300,664 - BWI76_RS06205 0.16 +0.7
1,300,989 - BWI76_RS06205 0.52 +0.4
1,301,100 - BWI76_RS06205 0.64 -1.6
1,301,333 + BWI76_RS06205 0.89 +0.6
1,301,688 + BWI76_RS06210 0.23 +0.6
1,301,740 - BWI76_RS06210 0.28 -1.7
1,302,125 + BWI76_RS06210 0.69 -0.7
1,302,146 + BWI76_RS06210 0.71 -0.3
1,302,154 - BWI76_RS06210 0.72 -0.7
1,302,308 - BWI76_RS06210 0.88 -0.4
1,302,308 - BWI76_RS06210 0.88 -0.8
1,302,454 + +0.3
1,302,490 - -0.3
1,302,530 + BWI76_RS06215 0.18 +1.3
1,303,027 - +0.4
1,303,354 + -0.4

Or see this region's nucleotide sequence