Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05825 and BWI76_RS05830 are separated by 163 nucleotides BWI76_RS05830 and BWI76_RS05835 are separated by 112 nucleotides
BWI76_RS05825: BWI76_RS05825 - putative site specific integrase, at 1,223,637 to 1,224,821
_RS05825
BWI76_RS05830: BWI76_RS05830 - tRNA-Thr, at 1,224,985 to 1,225,060
_RS05830
BWI76_RS05835: BWI76_RS05835 - gamma-glutamyl-phosphate reductase, at 1,225,173 to 1,226,426
_RS05835
Position (kb)
1224
1225
1226 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1223.994 kb on - strand, within BWI76_RS05825 at 1224.002 kb on + strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.010 kb on - strand, within BWI76_RS05825 at 1224.057 kb on - strand, within BWI76_RS05825 at 1224.057 kb on - strand, within BWI76_RS05825 at 1224.057 kb on - strand, within BWI76_RS05825 at 1224.057 kb on - strand, within BWI76_RS05825 at 1224.072 kb on + strand, within BWI76_RS05825 at 1224.072 kb on + strand, within BWI76_RS05825 at 1224.080 kb on - strand, within BWI76_RS05825 at 1224.080 kb on - strand at 1224.106 kb on + strand, within BWI76_RS05825 at 1224.132 kb on + strand, within BWI76_RS05825 at 1224.133 kb on + strand, within BWI76_RS05825 at 1224.140 kb on - strand, within BWI76_RS05825 at 1224.154 kb on + strand, within BWI76_RS05825 at 1224.154 kb on + strand, within BWI76_RS05825 at 1224.160 kb on - strand, within BWI76_RS05825 at 1224.162 kb on + strand, within BWI76_RS05825 at 1224.162 kb on - strand, within BWI76_RS05825 at 1224.162 kb on - strand, within BWI76_RS05825 at 1224.162 kb on - strand, within BWI76_RS05825 at 1224.162 kb on - strand, within BWI76_RS05825 at 1224.170 kb on - strand at 1224.170 kb on - strand, within BWI76_RS05825 at 1224.182 kb on - strand, within BWI76_RS05825 at 1224.224 kb on + strand, within BWI76_RS05825 at 1224.249 kb on - strand, within BWI76_RS05825 at 1224.302 kb on + strand, within BWI76_RS05825 at 1224.302 kb on + strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.315 kb on - strand, within BWI76_RS05825 at 1224.323 kb on - strand, within BWI76_RS05825 at 1224.370 kb on + strand, within BWI76_RS05825 at 1224.378 kb on - strand, within BWI76_RS05825 at 1224.378 kb on - strand, within BWI76_RS05825 at 1224.508 kb on + strand, within BWI76_RS05825 at 1224.722 kb on + strand at 1224.765 kb on - strand at 1224.766 kb on + strand at 1224.772 kb on - strand at 1224.869 kb on - strand at 1225.339 kb on + strand, within BWI76_RS05835 at 1225.528 kb on - strand, within BWI76_RS05835
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,223,994 - BWI76_RS05825 0.30 +1.7 1,224,002 + BWI76_RS05825 0.31 -0.6 1,224,010 - BWI76_RS05825 0.31 +0.3 1,224,010 - BWI76_RS05825 0.31 -0.4 1,224,010 - BWI76_RS05825 0.31 -0.5 1,224,010 - BWI76_RS05825 0.31 +2.7 1,224,010 - BWI76_RS05825 0.31 -1.4 1,224,010 - BWI76_RS05825 0.31 +0.2 1,224,010 - BWI76_RS05825 0.31 +0.6 1,224,010 - BWI76_RS05825 0.31 -0.4 1,224,010 - BWI76_RS05825 0.31 +0.2 1,224,010 - BWI76_RS05825 0.31 +0.2 1,224,057 - BWI76_RS05825 0.35 -1.2 1,224,057 - BWI76_RS05825 0.35 -0.7 1,224,057 - BWI76_RS05825 0.35 -0.0 1,224,057 - BWI76_RS05825 0.35 +0.6 1,224,072 + BWI76_RS05825 0.37 -0.7 1,224,072 + BWI76_RS05825 0.37 -2.8 1,224,080 - BWI76_RS05825 0.37 +0.5 1,224,080 - -0.9 1,224,106 + BWI76_RS05825 0.40 -1.7 1,224,132 + BWI76_RS05825 0.42 +0.8 1,224,133 + BWI76_RS05825 0.42 -2.0 1,224,140 - BWI76_RS05825 0.42 -3.1 1,224,154 + BWI76_RS05825 0.44 -3.4 1,224,154 + BWI76_RS05825 0.44 -1.1 1,224,160 - BWI76_RS05825 0.44 +0.7 1,224,162 + BWI76_RS05825 0.44 +1.7 1,224,162 - BWI76_RS05825 0.44 +0.9 1,224,162 - BWI76_RS05825 0.44 -0.6 1,224,162 - BWI76_RS05825 0.44 +2.5 1,224,162 - BWI76_RS05825 0.44 +0.2 1,224,170 - +1.1 1,224,170 - BWI76_RS05825 0.45 -0.3 1,224,182 - BWI76_RS05825 0.46 -3.9 1,224,224 + BWI76_RS05825 0.50 +1.2 1,224,249 - BWI76_RS05825 0.52 -0.6 1,224,302 + BWI76_RS05825 0.56 -0.7 1,224,302 + BWI76_RS05825 0.56 -1.9 1,224,310 - BWI76_RS05825 0.57 -2.1 1,224,310 - BWI76_RS05825 0.57 +1.3 1,224,310 - BWI76_RS05825 0.57 +1.5 1,224,310 - BWI76_RS05825 0.57 +0.2 1,224,315 - BWI76_RS05825 0.57 -0.6 1,224,323 - BWI76_RS05825 0.58 -1.6 1,224,370 + BWI76_RS05825 0.62 -0.5 1,224,378 - BWI76_RS05825 0.63 -0.5 1,224,378 - BWI76_RS05825 0.63 -1.4 1,224,508 + BWI76_RS05825 0.74 +0.6 1,224,722 + +0.0 1,224,765 - +0.0 1,224,766 + -1.6 1,224,772 - -0.6 1,224,869 - +0.7 1,225,339 + BWI76_RS05835 0.13 -4.0 1,225,528 - BWI76_RS05835 0.28 -4.0
Or see this region's nucleotide sequence