Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05830

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS05825 and BWI76_RS05830 are separated by 163 nucleotidesBWI76_RS05830 and BWI76_RS05835 are separated by 112 nucleotides BWI76_RS05825: BWI76_RS05825 - putative site specific integrase, at 1,223,637 to 1,224,821 _RS05825 BWI76_RS05830: BWI76_RS05830 - tRNA-Thr, at 1,224,985 to 1,225,060 _RS05830 BWI76_RS05835: BWI76_RS05835 - gamma-glutamyl-phosphate reductase, at 1,225,173 to 1,226,426 _RS05835 Position (kb) 1224 1225 1226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1223.994 kb on - strand, within BWI76_RS05825at 1224.002 kb on + strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.010 kb on - strand, within BWI76_RS05825at 1224.057 kb on - strand, within BWI76_RS05825at 1224.057 kb on - strand, within BWI76_RS05825at 1224.057 kb on - strand, within BWI76_RS05825at 1224.057 kb on - strand, within BWI76_RS05825at 1224.072 kb on + strand, within BWI76_RS05825at 1224.072 kb on + strand, within BWI76_RS05825at 1224.080 kb on - strand, within BWI76_RS05825at 1224.080 kb on - strandat 1224.106 kb on + strand, within BWI76_RS05825at 1224.132 kb on + strand, within BWI76_RS05825at 1224.133 kb on + strand, within BWI76_RS05825at 1224.140 kb on - strand, within BWI76_RS05825at 1224.154 kb on + strand, within BWI76_RS05825at 1224.154 kb on + strand, within BWI76_RS05825at 1224.160 kb on - strand, within BWI76_RS05825at 1224.162 kb on + strand, within BWI76_RS05825at 1224.162 kb on - strand, within BWI76_RS05825at 1224.162 kb on - strand, within BWI76_RS05825at 1224.162 kb on - strand, within BWI76_RS05825at 1224.162 kb on - strand, within BWI76_RS05825at 1224.170 kb on - strandat 1224.170 kb on - strand, within BWI76_RS05825at 1224.182 kb on - strand, within BWI76_RS05825at 1224.224 kb on + strand, within BWI76_RS05825at 1224.249 kb on - strand, within BWI76_RS05825at 1224.302 kb on + strand, within BWI76_RS05825at 1224.302 kb on + strand, within BWI76_RS05825at 1224.310 kb on - strand, within BWI76_RS05825at 1224.310 kb on - strand, within BWI76_RS05825at 1224.310 kb on - strand, within BWI76_RS05825at 1224.310 kb on - strand, within BWI76_RS05825at 1224.315 kb on - strand, within BWI76_RS05825at 1224.323 kb on - strand, within BWI76_RS05825at 1224.370 kb on + strand, within BWI76_RS05825at 1224.378 kb on - strand, within BWI76_RS05825at 1224.378 kb on - strand, within BWI76_RS05825at 1224.508 kb on + strand, within BWI76_RS05825at 1224.722 kb on + strandat 1224.765 kb on - strandat 1224.766 kb on + strandat 1224.772 kb on - strandat 1224.869 kb on - strandat 1225.339 kb on + strand, within BWI76_RS05835at 1225.528 kb on - strand, within BWI76_RS05835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
1,223,994 - BWI76_RS05825 0.30 +1.7
1,224,002 + BWI76_RS05825 0.31 -0.6
1,224,010 - BWI76_RS05825 0.31 +0.3
1,224,010 - BWI76_RS05825 0.31 -0.4
1,224,010 - BWI76_RS05825 0.31 -0.5
1,224,010 - BWI76_RS05825 0.31 +2.7
1,224,010 - BWI76_RS05825 0.31 -1.4
1,224,010 - BWI76_RS05825 0.31 +0.2
1,224,010 - BWI76_RS05825 0.31 +0.6
1,224,010 - BWI76_RS05825 0.31 -0.4
1,224,010 - BWI76_RS05825 0.31 +0.2
1,224,010 - BWI76_RS05825 0.31 +0.2
1,224,057 - BWI76_RS05825 0.35 -1.2
1,224,057 - BWI76_RS05825 0.35 -0.7
1,224,057 - BWI76_RS05825 0.35 -0.0
1,224,057 - BWI76_RS05825 0.35 +0.6
1,224,072 + BWI76_RS05825 0.37 -0.7
1,224,072 + BWI76_RS05825 0.37 -2.8
1,224,080 - BWI76_RS05825 0.37 +0.5
1,224,080 - -0.9
1,224,106 + BWI76_RS05825 0.40 -1.7
1,224,132 + BWI76_RS05825 0.42 +0.8
1,224,133 + BWI76_RS05825 0.42 -2.0
1,224,140 - BWI76_RS05825 0.42 -3.1
1,224,154 + BWI76_RS05825 0.44 -3.4
1,224,154 + BWI76_RS05825 0.44 -1.1
1,224,160 - BWI76_RS05825 0.44 +0.7
1,224,162 + BWI76_RS05825 0.44 +1.7
1,224,162 - BWI76_RS05825 0.44 +0.9
1,224,162 - BWI76_RS05825 0.44 -0.6
1,224,162 - BWI76_RS05825 0.44 +2.5
1,224,162 - BWI76_RS05825 0.44 +0.2
1,224,170 - +1.1
1,224,170 - BWI76_RS05825 0.45 -0.3
1,224,182 - BWI76_RS05825 0.46 -3.9
1,224,224 + BWI76_RS05825 0.50 +1.2
1,224,249 - BWI76_RS05825 0.52 -0.6
1,224,302 + BWI76_RS05825 0.56 -0.7
1,224,302 + BWI76_RS05825 0.56 -1.9
1,224,310 - BWI76_RS05825 0.57 -2.1
1,224,310 - BWI76_RS05825 0.57 +1.3
1,224,310 - BWI76_RS05825 0.57 +1.5
1,224,310 - BWI76_RS05825 0.57 +0.2
1,224,315 - BWI76_RS05825 0.57 -0.6
1,224,323 - BWI76_RS05825 0.58 -1.6
1,224,370 + BWI76_RS05825 0.62 -0.5
1,224,378 - BWI76_RS05825 0.63 -0.5
1,224,378 - BWI76_RS05825 0.63 -1.4
1,224,508 + BWI76_RS05825 0.74 +0.6
1,224,722 + +0.0
1,224,765 - +0.0
1,224,766 + -1.6
1,224,772 - -0.6
1,224,869 - +0.7
1,225,339 + BWI76_RS05835 0.13 -4.0
1,225,528 - BWI76_RS05835 0.28 -4.0

Or see this region's nucleotide sequence