Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00555 and BWI76_RS00560 overlap by 4 nucleotides BWI76_RS00560 and BWI76_RS00565 are separated by 90 nucleotides BWI76_RS00565 and BWI76_RS00570 overlap by 1 nucleotides BWI76_RS00570 and BWI76_RS00575 are separated by 100 nucleotides
BWI76_RS00555: BWI76_RS00555 - PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN, at 112,748 to 113,185
_RS00555
BWI76_RS00560: BWI76_RS00560 - hypothetical protein, at 113,182 to 113,736
_RS00560
BWI76_RS00565: BWI76_RS00565 - branched-chain amino acid transport, at 113,827 to 114,150
_RS00565
BWI76_RS00570: BWI76_RS00570 - AzlC family protein, at 114,150 to 114,809
_RS00570
BWI76_RS00575: BWI76_RS00575 - DNA-binding protein, at 114,910 to 115,458
_RS00575
Position (kb) 113
114
115 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 112.856 kb on + strand, within BWI76_RS00555 at 112.864 kb on - strand, within BWI76_RS00555 at 112.864 kb on - strand, within BWI76_RS00555 at 112.906 kb on - strand, within BWI76_RS00555 at 112.906 kb on - strand, within BWI76_RS00555 at 112.956 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.990 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 113.073 kb on - strand, within BWI76_RS00555 at 113.073 kb on - strand, within BWI76_RS00555 at 113.079 kb on + strand, within BWI76_RS00555 at 113.110 kb on - strand, within BWI76_RS00555 at 113.157 kb on + strand at 113.157 kb on + strand at 113.165 kb on - strand at 113.165 kb on - strand at 113.168 kb on - strand at 113.179 kb on + strand at 113.179 kb on + strand at 113.187 kb on - strand at 113.193 kb on + strand at 113.309 kb on + strand, within BWI76_RS00560 at 113.346 kb on + strand, within BWI76_RS00560 at 113.540 kb on + strand, within BWI76_RS00560 at 113.590 kb on - strand, within BWI76_RS00560 at 113.686 kb on + strand at 113.702 kb on - strand at 113.970 kb on + strand, within BWI76_RS00565 at 113.970 kb on + strand, within BWI76_RS00565 at 113.996 kb on + strand, within BWI76_RS00565 at 114.014 kb on - strand, within BWI76_RS00565 at 114.032 kb on + strand, within BWI76_RS00565 at 114.255 kb on + strand, within BWI76_RS00570 at 114.255 kb on + strand, within BWI76_RS00570 at 114.448 kb on - strand, within BWI76_RS00570 at 114.461 kb on + strand, within BWI76_RS00570 at 114.539 kb on + strand, within BWI76_RS00570 at 114.547 kb on - strand, within BWI76_RS00570 at 114.547 kb on - strand, within BWI76_RS00570 at 114.547 kb on - strand, within BWI76_RS00570 at 114.646 kb on - strand, within BWI76_RS00570 at 114.679 kb on - strand, within BWI76_RS00570 at 114.704 kb on - strand, within BWI76_RS00570 at 114.718 kb on + strand, within BWI76_RS00570 at 114.726 kb on - strand, within BWI76_RS00570 at 114.761 kb on - strand at 114.775 kb on - strand at 114.911 kb on - strand at 114.916 kb on - strand at 114.967 kb on + strand, within BWI76_RS00575 at 115.127 kb on - strand, within BWI76_RS00575
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 112,856 + BWI76_RS00555 0.25 -1.7 112,864 - BWI76_RS00555 0.26 +1.0 112,864 - BWI76_RS00555 0.26 +1.3 112,906 - BWI76_RS00555 0.36 -0.6 112,906 - BWI76_RS00555 0.36 +0.3 112,956 + BWI76_RS00555 0.47 -1.1 112,983 + BWI76_RS00555 0.54 +1.2 112,983 + BWI76_RS00555 0.54 -1.0 112,983 + BWI76_RS00555 0.54 +2.1 112,990 - BWI76_RS00555 0.55 +0.7 112,991 - BWI76_RS00555 0.55 +1.0 112,991 - BWI76_RS00555 0.55 +0.7 112,991 - BWI76_RS00555 0.55 +1.0 112,991 - BWI76_RS00555 0.55 +3.6 112,991 - BWI76_RS00555 0.55 +0.1 112,991 - BWI76_RS00555 0.55 +1.9 112,991 - BWI76_RS00555 0.55 -0.4 113,073 - BWI76_RS00555 0.74 +1.5 113,073 - BWI76_RS00555 0.74 -3.2 113,079 + BWI76_RS00555 0.76 +1.0 113,110 - BWI76_RS00555 0.83 +0.8 113,157 + +1.5 113,157 + -1.0 113,165 - -0.7 113,165 - -0.3 113,168 - -0.7 113,179 + -0.4 113,179 + -0.0 113,187 - +0.3 113,193 + -0.1 113,309 + BWI76_RS00560 0.23 +1.4 113,346 + BWI76_RS00560 0.30 -2.5 113,540 + BWI76_RS00560 0.65 -0.1 113,590 - BWI76_RS00560 0.74 +0.2 113,686 + +0.1 113,702 - -0.3 113,970 + BWI76_RS00565 0.44 -0.3 113,970 + BWI76_RS00565 0.44 -4.4 113,996 + BWI76_RS00565 0.52 -0.7 114,014 - BWI76_RS00565 0.58 -3.1 114,032 + BWI76_RS00565 0.63 -1.1 114,255 + BWI76_RS00570 0.16 +0.0 114,255 + BWI76_RS00570 0.16 -0.0 114,448 - BWI76_RS00570 0.45 -0.2 114,461 + BWI76_RS00570 0.47 +1.2 114,539 + BWI76_RS00570 0.59 -3.4 114,547 - BWI76_RS00570 0.60 -0.9 114,547 - BWI76_RS00570 0.60 -0.6 114,547 - BWI76_RS00570 0.60 -0.5 114,646 - BWI76_RS00570 0.75 -0.5 114,679 - BWI76_RS00570 0.80 +2.9 114,704 - BWI76_RS00570 0.84 -0.4 114,718 + BWI76_RS00570 0.86 +0.7 114,726 - BWI76_RS00570 0.87 -0.6 114,761 - +1.1 114,775 - -0.3 114,911 - -1.8 114,916 - -0.2 114,967 + BWI76_RS00575 0.10 +0.5 115,127 - BWI76_RS00575 0.40 -2.9
Or see this region's nucleotide sequence