Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00415

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS00410 and BWI76_RS00415 are separated by 133 nucleotidesBWI76_RS00415 and BWI76_RS00420 overlap by 7 nucleotidesBWI76_RS00420 and BWI76_RS00425 overlap by 4 nucleotides BWI76_RS00410: BWI76_RS00410 - translational GTPase TypA, at 85,322 to 87,145 _RS00410 BWI76_RS00415: BWI76_RS00415 - glucose-1-phosphatase, at 87,279 to 87,878 _RS00415 BWI76_RS00420: BWI76_RS00420 - hypothetical protein, at 87,872 to 88,732 _RS00420 BWI76_RS00425: BWI76_RS00425 - D-tyrosyl-tRNA(Tyr) deacylase, at 88,729 to 89,166 _RS00425 Position (kb) 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.087 kb on + strandat 87.269 kb on - strandat 87.414 kb on - strand, within BWI76_RS00415at 87.492 kb on + strand, within BWI76_RS00415at 87.523 kb on + strand, within BWI76_RS00415at 87.543 kb on - strand, within BWI76_RS00415at 87.604 kb on - strand, within BWI76_RS00415at 87.614 kb on + strand, within BWI76_RS00415at 87.772 kb on - strand, within BWI76_RS00415at 87.796 kb on + strand, within BWI76_RS00415at 87.804 kb on - strand, within BWI76_RS00415at 87.882 kb on - strandat 88.062 kb on + strand, within BWI76_RS00420at 88.140 kb on + strand, within BWI76_RS00420at 88.295 kb on - strand, within BWI76_RS00420at 88.316 kb on - strand, within BWI76_RS00420at 88.464 kb on + strand, within BWI76_RS00420at 88.464 kb on - strand, within BWI76_RS00420at 88.472 kb on - strand, within BWI76_RS00420at 88.484 kb on - strand, within BWI76_RS00420at 88.523 kb on + strand, within BWI76_RS00420at 88.531 kb on - strand, within BWI76_RS00420at 88.599 kb on - strand, within BWI76_RS00420at 88.648 kb on + strandat 88.736 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
87,087 + -0.9
87,269 - +0.6
87,414 - BWI76_RS00415 0.23 +0.4
87,492 + BWI76_RS00415 0.35 +2.5
87,523 + BWI76_RS00415 0.41 +0.6
87,543 - BWI76_RS00415 0.44 +1.5
87,604 - BWI76_RS00415 0.54 +1.7
87,614 + BWI76_RS00415 0.56 +1.0
87,772 - BWI76_RS00415 0.82 -0.4
87,796 + BWI76_RS00415 0.86 +2.0
87,804 - BWI76_RS00415 0.88 -1.4
87,882 - -2.6
88,062 + BWI76_RS00420 0.22 -1.0
88,140 + BWI76_RS00420 0.31 +2.3
88,295 - BWI76_RS00420 0.49 +2.4
88,316 - BWI76_RS00420 0.52 -3.1
88,464 + BWI76_RS00420 0.69 -2.7
88,464 - BWI76_RS00420 0.69 -3.7
88,472 - BWI76_RS00420 0.70 -2.7
88,484 - BWI76_RS00420 0.71 -1.9
88,523 + BWI76_RS00420 0.76 +1.4
88,531 - BWI76_RS00420 0.77 +1.0
88,599 - BWI76_RS00420 0.84 +1.2
88,648 + +1.0
88,736 + -0.5

Or see this region's nucleotide sequence