Experiment: Succinic Acid; Light intensity 75 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3777 and Rru_A3778 are separated by 45 nucleotides Rru_A3778 and Rru_A3779 are separated by 56 nucleotides Rru_A3779 and Rru_A3780 overlap by 8 nucleotides Rru_A3780 and Rru_A3781 are separated by 172 nucleotides
Rru_A3777: Rru_A3777 - hypothetical protein (NCBI), at 4,325,901 to 4,326,668
_A3777
Rru_A3778: Rru_A3778 - Protein of unknown function DUF150 (NCBI), at 4,326,714 to 4,327,391
_A3778
Rru_A3779: Rru_A3779 - NusA antitermination factor (NCBI), at 4,327,448 to 4,328,998
_A3779
Rru_A3780: Rru_A3780 - Protein of unknown function DUF448 (NCBI), at 4,328,991 to 4,329,782
_A3780
Rru_A3781: Rru_A3781 - Initiation factor 2 (NCBI), at 4,329,955 to 4,332,576
_A3781
Position (kb) 4327
4328
4329 Strain fitness (log2 ratio) -1
0
1 at 4326.540 kb on + strand, within Rru_A3777 at 4326.541 kb on - strand, within Rru_A3777 at 4326.579 kb on + strand, within Rru_A3777 at 4326.579 kb on + strand, within Rru_A3777 at 4326.579 kb on + strand, within Rru_A3777 at 4327.035 kb on + strand, within Rru_A3778 at 4329.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 75 uM remove 4,326,540 + Rru_A3777 0.83 +0.1 4,326,541 - Rru_A3777 0.83 -0.6 4,326,579 + Rru_A3777 0.88 +1.2 4,326,579 + Rru_A3777 0.88 +1.1 4,326,579 + Rru_A3777 0.88 +1.4 4,327,035 + Rru_A3778 0.47 -0.9 4,329,899 + +0.1
Or see this region's nucleotide sequence